View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12061_high_10 (Length: 240)
Name: NF12061_high_10
Description: NF12061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12061_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 49485076 - 49485299
Alignment:
| Q |
1 |
attatactgaactgagaaataaattgttaataaaacaatataaatatggaaaacagaaaataccattgccaatattgcatccattacttgtttcttcact |
100 |
Q |
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| T |
49485076 |
attataatgaactgagaaataaattgttaataaaacaatataaatatggaaaacagaaaataccattgccaatattgcatccattacttgtttcttcact |
49485175 |
T |
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| Q |
101 |
tcatcatatacctgtgataaataatatgaagtaaccccagagttagaataggggaaagtaaaataaaattaagaaaagtgttcaaaggaatctcatcacc |
200 |
Q |
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| T |
49485176 |
tcatcatatacctgtgataaataatatgaagtaaccccagagttagaataggggaaagtaaaataaaattaagaaaagtgttcaaaggaatctcatcacc |
49485275 |
T |
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| Q |
201 |
aaccaagtgatagaaggataagaa |
224 |
Q |
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| T |
49485276 |
aaccaagtgatagaaggataagaa |
49485299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 49701566 - 49701700
Alignment:
| Q |
8 |
tgaactgagaaataaattgttaataaaacaatataaatatggaaaacagaaaataccattgccaatattgcatccattacttgtttcttcacttcatcat |
107 |
Q |
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| T |
49701566 |
tgaactgagaaataaattgtttataaat-aacataaaaatggaaaacagaaaataccattgctaatattgcatccattacttgtctatgcatctcatcat |
49701664 |
T |
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| Q |
108 |
atacctgtgataaataatatgaagtaaccccagagt |
143 |
Q |
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| T |
49701665 |
atacctgagataaataaagtgaagtaatcccagagt |
49701700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 49701766 - 49701809
Alignment:
| Q |
181 |
ttcaaaggaatctcatcaccaaccaagtgatagaaggataagaa |
224 |
Q |
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| T |
49701766 |
ttcaaaggaatctcagcaccaaccaagtaatagaaggataagaa |
49701809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 50240046 - 50240087
Alignment:
| Q |
71 |
aatattgcatccattacttgtttcttcacttcatcatatacc |
112 |
Q |
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| T |
50240046 |
aatattgcatccattacttgtttatttaattcatcatatacc |
50240087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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