View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12061_high_3 (Length: 463)
Name: NF12061_high_3
Description: NF12061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12061_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 54495355 - 54494913
Alignment:
| Q |
1 |
gagtagaatgaatagtgagggatgggtgggggtcatataatctatgggattcacaaacacaacaagcagtgatttctaaagcatggatatcagaaataat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54495355 |
gagtagaatgaatagtgagggatggg----ggtcatataatctatgggattcacaaacacaacaagcagtgatttctaaagcatggatatcagaaataat |
54495260 |
T |
|
| Q |
101 |
aggtatatgttgtagaggtagatattttgcttgaaatgaggtagaactttagattaatctaaagattcaatagagactccttgactatttcccattataa |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
54495259 |
aggtatatgttgtagaggtggatattttgcttgaaatgaggtagaactttagattaatctaaagattcaatagagacttcttgactatttcccattataa |
54495160 |
T |
|
| Q |
201 |
ctttttcctggccagtgcagggactaggatgggtggtattctgttggttgaaggtgaggtgatgctccggagtatggataccaaggggcatcgtagtata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
54495159 |
ctttttcctggccagtgcagggactaggatgggtggtattctgttggttgaaggtgaggtgatgctccggagtatggataccaaggggcatcatagtata |
54495060 |
T |
|
| Q |
301 |
ttgagggagttgaatactcaatggtcaaagcttgtagatgagttttgatcgtagtgacaccaagtagcagccttgtgccttggccttgggtaaatttcac |
400 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54495059 |
ttgagggagttgaatactcaacggtcaaagcttgtagatgagttttgatcgtagtgataccaagtagcagccttgtgccttggccttgggtaaatttcac |
54494960 |
T |
|
| Q |
401 |
aatgtgtgtgatttgtattgcgccatcgacaacaaccatgaccattg |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54494959 |
aatgtgtgtgatttgtattgcgccatcgacaacaaccatgaccattg |
54494913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University