View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12061_low_1 (Length: 573)

Name: NF12061_low_1
Description: NF12061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12061_low_1
NF12061_low_1
[»] chr6 (4 HSPs)
chr6 (20-415)||(32219498-32219895)
chr6 (410-570)||(32219373-32219534)
chr6 (182-257)||(10519863-10519936)
chr6 (183-246)||(9069774-9069837)
[»] chr7 (2 HSPs)
chr7 (338-523)||(20067720-20067905)
chr7 (411-472)||(8129342-8129403)
[»] chr4 (1 HSPs)
chr4 (182-310)||(44229534-44229662)
[»] chr1 (1 HSPs)
chr1 (182-320)||(51276211-51276348)
[»] chr8 (1 HSPs)
chr8 (183-247)||(24953449-24953512)
[»] chr2 (1 HSPs)
chr2 (380-417)||(28548326-28548363)


Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-169; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 20 - 415
Target Start/End: Complemental strand, 32219895 - 32219498
Alignment:
Q  20 catcgttcttctctccaatctattttctctgcnnnnnnn--cacatgaaaatacataagcacaacaatgcatcgacctgcgtgagaagtagacgacggct 117  Q
    ||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||     
T  32219895 catcgttcttctctccaatctattttctctgcaaaaaaaaacacatgaaaatacataagcacaacaatacatcgacctgcgtgagaagtagacgacagcg 32219796  T
Q  118 ggagagagagacggtgaaggtcgtggtcggcggaggtggaggagttcatgatagatggtgacatagacggtggtgagaaaggagtgttcagatctgaagg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32219795 ggagagagagacggtgaaggtcgtggtcggcggaggtggaggaattcatgatagatggtgacatagatggtggtgagaaaggagtgttcagatctgaagg 32219696  T
Q  218 gattggaggtcgatgacgacgatggtgaggacggcgtaatggttttctaacgagggtgatggtagtgacaagaatggaaggcgcggtggcaaggacagac 317  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||| ||    
T  32219695 gattggaggtcgatgacgacgatggtgaggacgacgtaatggttttctaacgagggtgatggtagtgacgagaatggagggcacggtggcaaggacaaac 32219596  T
Q  318 tgaaggtggtggtcgccggcgccgtgagtttcggatctaaacaacaaagggacaacgacgacggtggtggtcattaatgagggcggagggtgcggtgg 415  Q
    |||||||||||| |||||||||||||| |||| |||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  32219595 tgaaggtggtggccgccggcgccgtgaatttcagatctaaacagcaaagggacaacgacgacggtggtgctcattaacgagggcggagggtgcggtgg 32219498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 410 - 570
Target Start/End: Complemental strand, 32219534 - 32219373
Alignment:
Q  410 cggtggtggtcactaatgaaggcggagggtgcggtggcgattatggcggtggtggaagagggctacggcggtgaagacacaaagcatggtggaagaatag 509  Q
    |||||||| ||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||    
T  32219534 cggtggtgctcattaacgagggcggagggtgcggtggcgattatggcggtggtgggagagggctacgacggtgaggacacaaagcatggtggaagaatag 32219435  T
Q  510 agaaag-aaacaacacacagagaagagaggaaggagatatggtgttgtgtttttacaaaatt 570  Q
    |||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32219434 agaaagaaaaaaacacacagagaagagaggaaggagatagggtgttgtgtttttacaaaatt 32219373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 10519936 - 10519863
Alignment:
Q  182 agacggtggtgagaaaggagtgttcagatctgaagggattggaggtcgatgacgacgatggtgaggacggcgtaat 257  Q
    ||||||||||||||||||  ||||| ||| ||||||| ||||||||||||| ||||| ||||||||||||||||||    
T  10519936 agacggtggtgagaaagg--tgttccgatttgaaggggttggaggtcgatggcgacgttggtgaggacggcgtaat 10519863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 9069774 - 9069837
Alignment:
Q  183 gacggtggtgagaaaggagtgttcagatctgaagggattggaggtcgatgacgacgatggtgag 246  Q
    |||||||||||||| || ||||||||||||||||||||| ||||| || ||||||| |||||||    
T  9069774 gacggtggtgagaatggtgtgttcagatctgaagggattagaggttgacgacgacgttggtgag 9069837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 338 - 523
Target Start/End: Complemental strand, 20067905 - 20067720
Alignment:
Q  338 gccgtgagtttcggatctaaaca-ac-aaagggacaacgacgacggtggtggtcattaatgagggcggagggtgcggtggtggtcactaatgaaggcgga 435  Q
    |||||||||||||||||| |||| || |||||||||| ||||| ||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  20067905 gccgtgagtttcggatcttaacagactaaagggacaatgacgatggtggtggtcattaacgagggcggatggtgcagtggtggtcactaatgaaggcgga 20067806  T
Q  436 gggtgcggtggcgattatggcggtggtggaagagggctacggcggtgaagacacaaagcatggtggaagaatagagaaagaaacaaca 523  Q
    || || |||||||||||||| |||||||| || |||   ||| ||||| |  ||||||||||||||||||||||||| ||||| ||||    
T  20067805 ggatgtggtggcgattatggtggtggtgggagtgggaggcggtggtgagg--acaaagcatggtggaagaatagagagagaaaaaaca 20067720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 472
Target Start/End: Original strand, 8129342 - 8129403
Alignment:
Q  411 ggtggtggtcactaatgaaggcggagggtgcggtggcgattatggcggtggtggaagagggc 472  Q
    ||||||| |||||||||| | ||||||||||||||| ||| | ||||||||||  |||||||    
T  8129342 ggtggtgatcactaatgaggacggagggtgcggtggtgatgacggcggtggtgagagagggc 8129403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 182 - 310
Target Start/End: Original strand, 44229534 - 44229662
Alignment:
Q  182 agacggtggtgagaaaggagtgttcagatctgaagggattggaggtcgatgacgacgatggtgaggacggcgtaatggttttctaacgagggtgatggta 281  Q
    |||||||||||||||||  |||||||||||||||||| |||||||||||||||||| ||||||||||||   ||||||| |  |  ||||| ||||||||    
T  44229534 agacggtggtgagaaagttgtgttcagatctgaaggggttggaggtcgatgacgacaatggtgaggacgatataatggtgtggtggcgaggatgatggta 44229633  T
Q  282 gtgacaagaatggaaggcgcggtggcaag 310  Q
    |||||||| | ||||||||||| ||||||    
T  44229634 gtgacaaggacggaaggcgcggcggcaag 44229662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 182 - 320
Target Start/End: Original strand, 51276211 - 51276348
Alignment:
Q  182 agacggtggtgagaaaggagtgttcagatctgaagggattggaggtcgatgacgacgatggtgaggacggcgtaatggttttctaacgagggtgatggta 281  Q
    |||||||||||||||||  ||||||||||| |||||| ||| ||||||||||||||||||||||||||||  ||||||| |  |  ||||| ||||||||    
T  51276211 agacggtggtgagaaagttgtgttcagatccgaaggggttgaaggtcgatgacgacgatggtgaggacggtataatggtgtggtggcgaggatgatggta 51276310  T
Q  282 gtgacaagaatggaaggcgcggtggcaaggacagactga 320  Q
    |||||||| | ||| ||||||| ||||| ||||||||||    
T  51276311 gtgacaaggacggagggcgcggcggcaa-gacagactga 51276348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 24953449 - 24953512
Alignment:
Q  183 gacggtggtgagaaaggagtgttcagatctgaagggattggaggtcgatgacgacgatggtgagg 247  Q
    |||||||||||| | || ||||||||||||||| |||||||||||||| ||||| | ||||||||    
T  24953449 gacggtggtgaggacggcgtgttcagatctgaa-ggattggaggtcgaagacgatggtggtgagg 24953512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 417
Target Start/End: Original strand, 28548326 - 28548363
Alignment:
Q  380 ggtggtggtcattaatgagggcggagggtgcggtggtg 417  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  28548326 ggtggtggtcactaatgaggacggagggtgcggtggtg 28548363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University