View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12061_low_2 (Length: 567)
Name: NF12061_low_2
Description: NF12061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12061_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 35 - 552
Target Start/End: Original strand, 40113627 - 40114138
Alignment:
| Q |
35 |
aaaaccgaatgttaactttttggacaaccnnnnnnngtactttgatcttaattgtcctagtagggtcttaaattgacgaaataactctctatccctcagc |
134 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40113627 |
aaaaccgaatgttaactttttggacaacctttttttgtactttgatcttaattgtcctagtagggtcttaaattgacgaaataactct--atccctcagc |
40113724 |
T |
|
| Q |
135 |
agttctcatctaacaaggggatacttctgcatatgaaactgctgcccaaatgggataataaatttccaattcaaaagatagccattccttcctatgcttg |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40113725 |
agttctcatctaacaaggggatacttctgcatatgaaactgctgcccaaatgggataataaatttccaattcaaaagatagccattccttcctatgcttg |
40113824 |
T |
|
| Q |
235 |
gaacnnnnnnnnnncttctgttcacttgtgatattcttccaattttgttcttggcaattatgcagcatgcttgttgaaatttaaacactcgtgccttgtg |
334 |
Q |
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|||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40113825 |
gaacttttttt----tttttttcacttgtgatattcttccaattttgttcttggcaattatgcagcatgcttgttgaaatttaaacactcgtgccttgtg |
40113920 |
T |
|
| Q |
335 |
taaaaattaaatgctggctattgcgttggatatcatttgtagaagtagattacattcatctggtatatttatagttatccttctgttttaggttattatg |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40113921 |
taaaaattaaatgctggctattgcgttggatatcatttgtagaagtagattacattcatctggtatatttatagttatccttctgttttaggttattatg |
40114020 |
T |
|
| Q |
435 |
tattgtannnnnnnactcacaatttataatagtttttcaaaatgactgatcagagaagctagttgaagaaggaagaaaatttgatgcagtcatggccttg |
534 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40114021 |
tattgtatttttttactcgcaatttataatagtttttcaaaatgactgatcagagaagctagttgaagaaggaagaaaatttgatgcagtcatggccttg |
40114120 |
T |
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| Q |
535 |
gaggtactctctctgctc |
552 |
Q |
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|||||||||||||||||| |
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| T |
40114121 |
gaggtactctctctgctc |
40114138 |
T |
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