View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12061_low_4 (Length: 441)

Name: NF12061_low_4
Description: NF12061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12061_low_4
NF12061_low_4
[»] chr2 (4 HSPs)
chr2 (10-212)||(38095674-38095873)
chr2 (341-426)||(38095194-38095278)
chr2 (301-342)||(38095326-38095367)
chr2 (252-288)||(38095634-38095670)


Alignment Details
Target: chr2 (Bit Score: 145; Significance: 4e-76; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 38095873 - 38095674
Alignment:
Q  10 aaaggtgtgagaagattagaggaagggggtttttatagagaaattgagaacgatatatgtgaattttttagtagataagctcaataattgtttgtttgnn 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       
T  38095873 aaaggtgtgagaagattagaggaagggggtttttatagagaaattgagaacgatatatgtgaattttttagtagataagctcaataattgttttttt--- 38095777  T
Q  110 nnnnnnnagtggtgtggtggggtccattacactcaagctacaaacaaatgggatttgtttatctt---ttgtttgagtcactttaaataaaattttccaa 206  Q
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  38095776 --tttttagtggtgtggt-gggtccattacactcaagctacaaacaaatgggatttgtttatcttttgttgtttgagtcactttaaataaaattttccaa 38095680  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 341 - 426
Target Start/End: Complemental strand, 38095278 - 38095194
Alignment:
Q  341 gattcttactgcacttattgcaatagtatattatgttattttgatgattatgatagtaatagtattaatatagtggtcgtataaaa 426  Q
    ||||||||||||| |||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38095278 gattcttactgcatttattgtaatagt-tattatgttattttgatgattacgatagtaatagtattaatatagtggtcgtataaaa 38095194  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 38095367 - 38095326
Alignment:
Q  301 tcttaactattaggttatcaattatttaactgttattagaga 342  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38095367 tcttaactattaggttatcaattatttaactgttattagaga 38095326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 38095670 - 38095634
Alignment:
Q  252 actaatagataataacagtattcaaatcttctctatc 288  Q
    |||||||||||||||||||||||||||||||||||||    
T  38095670 actaatagataataacagtattcaaatcttctctatc 38095634  T

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