View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12061_low_5 (Length: 389)

Name: NF12061_low_5
Description: NF12061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12061_low_5
NF12061_low_5
[»] scaffold0251 (2 HSPs)
scaffold0251 (182-373)||(6742-6929)
scaffold0251 (3-70)||(7040-7107)
[»] scaffold0009 (2 HSPs)
scaffold0009 (3-66)||(83575-83638)
scaffold0009 (3-55)||(83522-83574)
[»] chr8 (30 HSPs)
chr8 (3-52)||(21932097-21932146)
chr8 (3-55)||(17796636-17796687)
chr8 (3-55)||(25163290-25163341)
chr8 (3-55)||(30422311-30422362)
chr8 (3-55)||(12758623-12758674)
chr8 (3-55)||(17541370-17541421)
chr8 (3-55)||(19153243-19153294)
chr8 (3-55)||(23264508-23264559)
chr8 (3-55)||(45539365-45539416)
chr8 (12-55)||(18122021-18122064)
chr8 (14-52)||(17914338-17914376)
chr8 (21-70)||(19957235-19957284)
chr8 (3-47)||(16206458-16206501)
chr8 (3-55)||(17007529-17007580)
chr8 (3-55)||(23185627-23185678)
chr8 (20-55)||(14990984-14991019)
chr8 (20-55)||(15336983-15337018)
chr8 (20-55)||(15426048-15426083)
chr8 (20-55)||(15517352-15517387)
chr8 (12-55)||(19942455-19942498)
chr8 (20-55)||(22662291-22662326)
chr8 (27-70)||(25850888-25850930)
chr8 (12-55)||(39692760-39692803)
chr8 (25-55)||(13431520-13431550)
chr8 (13-55)||(16188489-16188531)
chr8 (21-55)||(19706732-19706766)
chr8 (12-45)||(16682142-16682175)
chr8 (27-55)||(1210604-1210632)
chr8 (27-55)||(33052215-33052243)
chr8 (27-55)||(40846308-40846336)
[»] chr5 (26 HSPs)
chr5 (3-55)||(90295-90347)
chr5 (3-55)||(13736968-13737019)
chr5 (12-55)||(6498538-6498581)
chr5 (12-55)||(23413846-23413889)
chr5 (12-70)||(9399483-9399541)
chr5 (21-70)||(35932885-35932934)
chr5 (3-55)||(7746558-7746609)
chr5 (3-55)||(21100612-21100663)
chr5 (3-55)||(22000889-22000940)
chr5 (3-70)||(33932476-33932542)
chr5 (12-70)||(17814172-17814230)
chr5 (21-55)||(31146482-31146516)
chr5 (3-55)||(6513292-6513343)
chr5 (20-56)||(10847995-10848031)
chr5 (3-55)||(11993113-11993163)
chr5 (15-55)||(21076056-21076096)
chr5 (3-55)||(31487432-31487483)
chr5 (12-55)||(12353733-12353776)
chr5 (20-55)||(15516192-15516227)
chr5 (12-55)||(37395391-37395434)
chr5 (21-55)||(21199890-21199924)
chr5 (27-55)||(25770525-25770553)
chr5 (27-55)||(26120704-26120732)
chr5 (3-55)||(31117099-31117150)
chr5 (26-54)||(31143360-31143388)
chr5 (27-55)||(31589879-31589907)
[»] chr3 (44 HSPs)
chr3 (3-55)||(28581321-28581373)
chr3 (3-55)||(15902421-15902472)
chr3 (12-55)||(20628350-20628393)
chr3 (12-70)||(29854622-29854680)
chr3 (3-55)||(14954636-14954687)
chr3 (3-55)||(14968595-14968646)
chr3 (3-55)||(29952317-29952368)
chr3 (3-55)||(30001471-30001522)
chr3 (3-55)||(49643644-49643695)
chr3 (3-70)||(6089940-6090005)
chr3 (12-55)||(17239817-17239860)
chr3 (12-55)||(38178533-38178576)
chr3 (3-55)||(1241955-1242006)
chr3 (3-55)||(12727116-12727167)
chr3 (3-55)||(13781466-13781517)
chr3 (3-55)||(14393875-14393926)
chr3 (3-55)||(17667596-17667647)
chr3 (3-55)||(40799116-40799167)
chr3 (12-55)||(12963974-12964017)
chr3 (12-55)||(13939122-13939165)
chr3 (12-55)||(19889827-19889870)
chr3 (12-55)||(49554398-49554441)
chr3 (3-70)||(52283006-52283072)
chr3 (3-54)||(52919651-52919701)
chr3 (12-70)||(46350729-46350787)
chr3 (3-55)||(11189219-11189270)
chr3 (3-55)||(13823296-13823347)
chr3 (3-55)||(18122528-18122579)
chr3 (3-55)||(20645380-20645431)
chr3 (3-55)||(31302575-31302626)
chr3 (11-55)||(40850204-40850247)
chr3 (3-55)||(41494229-41494279)
chr3 (12-55)||(19885966-19886009)
chr3 (20-55)||(21639177-21639212)
chr3 (20-55)||(22465376-22465411)
chr3 (13-55)||(16031729-16031771)
chr3 (21-55)||(22140233-22140267)
chr3 (20-70)||(49669381-49669430)
chr3 (22-55)||(12967541-12967574)
chr3 (3-55)||(8875005-8875056)
chr3 (3-70)||(11222004-11222073)
chr3 (27-55)||(13410965-13410993)
chr3 (27-55)||(13698584-13698612)
chr3 (11-55)||(30055064-30055107)
[»] chr7 (45 HSPs)
chr7 (3-70)||(23280858-23280925)
chr7 (3-57)||(15467137-15467190)
chr7 (3-55)||(4493768-4493819)
chr7 (3-55)||(16546220-16546271)
chr7 (3-55)||(16619391-16619442)
chr7 (3-55)||(33692605-33692657)
chr7 (12-55)||(13645675-13645718)
chr7 (12-55)||(13731567-13731610)
chr7 (20-70)||(1292262-1292312)
chr7 (12-70)||(30025143-30025201)
chr7 (14-55)||(28623246-28623287)
chr7 (3-55)||(9710717-9710768)
chr7 (3-55)||(10884053-10884104)
chr7 (3-55)||(16315420-16315471)
chr7 (3-55)||(16557493-16557544)
chr7 (3-55)||(16608118-16608169)
chr7 (3-55)||(19328893-19328944)
chr7 (3-55)||(22580137-22580188)
chr7 (3-55)||(33604128-33604179)
chr7 (3-55)||(35954794-35954845)
chr7 (12-55)||(2499252-2499295)
chr7 (12-55)||(13302085-13302128)
chr7 (3-70)||(14186895-14186961)
chr7 (3-69)||(2914539-2914603)
chr7 (12-70)||(13027842-13027899)
chr7 (20-70)||(15574506-15574556)
chr7 (21-70)||(13902553-13902601)
chr7 (3-55)||(11792094-11792145)
chr7 (3-55)||(12367640-12367691)
chr7 (3-55)||(13879367-13879418)
chr7 (3-55)||(21691648-21691699)
chr7 (3-55)||(41843305-41843356)
chr7 (3-55)||(48237718-48237769)
chr7 (13-52)||(5001754-5001793)
chr7 (12-55)||(13138816-13138859)
chr7 (12-55)||(13681519-13681562)
chr7 (20-55)||(15705392-15705427)
chr7 (20-55)||(33420979-33421014)
chr7 (14-55)||(13261568-13261609)
chr7 (12-57)||(44466302-44466347)
chr7 (3-70)||(13034736-13034803)
chr7 (15-55)||(13259337-13259377)
chr7 (3-55)||(13473370-13473420)
chr7 (3-55)||(14424531-14424582)
chr7 (27-55)||(16812265-16812293)
[»] chr6 (27 HSPs)
chr6 (3-70)||(10631346-10631412)
chr6 (3-55)||(15532504-15532555)
chr6 (3-70)||(17380772-17380838)
chr6 (3-70)||(21624301-21624367)
chr6 (12-70)||(29537830-29537888)
chr6 (3-55)||(14732989-14733040)
chr6 (3-55)||(15301442-15301493)
chr6 (3-55)||(21234380-21234431)
chr6 (3-55)||(32543487-32543538)
chr6 (12-55)||(14101326-14101369)
chr6 (12-70)||(16528524-16528582)
chr6 (12-69)||(18377637-18377694)
chr6 (3-70)||(9717035-9717101)
chr6 (12-55)||(20113516-20113559)
chr6 (3-55)||(13435109-13435160)
chr6 (3-55)||(13601391-13601442)
chr6 (3-55)||(19623211-19623262)
chr6 (3-55)||(22801367-22801418)
chr6 (20-55)||(16332954-16332989)
chr6 (12-55)||(19085356-19085399)
chr6 (3-54)||(20731580-20731630)
chr6 (6-49)||(24116047-24116090)
chr6 (21-55)||(17304155-17304189)
chr6 (20-53)||(12422468-12422501)
chr6 (21-70)||(19066905-19066954)
chr6 (27-55)||(15395556-15395584)
chr6 (3-55)||(25593296-25593346)
[»] scaffold0217 (2 HSPs)
scaffold0217 (3-55)||(18261-18313)
scaffold0217 (3-70)||(763-829)
[»] scaffold0210 (1 HSPs)
scaffold0210 (3-70)||(832-898)
[»] scaffold0479 (1 HSPs)
scaffold0479 (3-55)||(9192-9243)
[»] scaffold0315 (1 HSPs)
scaffold0315 (3-55)||(7895-7946)
[»] chr4 (30 HSPs)
chr4 (3-55)||(10072112-10072163)
chr4 (3-55)||(12599977-12600028)
chr4 (11-55)||(23120759-23120803)
chr4 (3-55)||(23749748-23749799)
chr4 (3-55)||(24628733-24628784)
chr4 (12-55)||(3792555-3792598)
chr4 (3-70)||(14605742-14605808)
chr4 (12-55)||(14905169-14905212)
chr4 (3-54)||(22676396-22676446)
chr4 (3-70)||(29120575-29120641)
chr4 (12-70)||(56033735-56033793)
chr4 (3-55)||(13576984-13577035)
chr4 (7-55)||(19883915-19883962)
chr4 (3-55)||(29681353-29681404)
chr4 (3-55)||(44397431-44397482)
chr4 (3-55)||(54679083-54679134)
chr4 (20-55)||(3106267-3106302)
chr4 (12-55)||(10071726-10071769)
chr4 (12-55)||(19621834-19621877)
chr4 (20-70)||(17399531-17399581)
chr4 (21-55)||(40859929-40859963)
chr4 (10-51)||(19665593-19665634)
chr4 (3-55)||(16631661-16631712)
chr4 (3-55)||(37986449-37986500)
chr4 (12-55)||(36470139-36470182)
chr4 (3-57)||(55379532-55379585)
chr4 (3-40)||(17246847-17246883)
chr4 (21-70)||(41115665-41115713)
chr4 (27-55)||(10329174-10329202)
chr4 (27-55)||(17527237-17527265)
[»] chr2 (32 HSPs)
chr2 (3-55)||(24575256-24575307)
chr2 (3-55)||(39038465-39038516)
chr2 (3-70)||(22455784-22455850)
chr2 (3-54)||(25188627-25188677)
chr2 (3-70)||(27294700-27294766)
chr2 (3-55)||(13964808-13964859)
chr2 (3-55)||(17964128-17964179)
chr2 (3-55)||(20569574-20569625)
chr2 (3-55)||(24851497-24851548)
chr2 (3-55)||(28702049-28702100)
chr2 (3-55)||(40780533-40780584)
chr2 (3-55)||(45087822-45087873)
chr2 (3-70)||(24778540-24778606)
chr2 (27-70)||(25917923-25917966)
chr2 (12-70)||(22257398-22257456)
chr2 (21-55)||(22782473-22782507)
chr2 (11-57)||(22786488-22786533)
chr2 (21-55)||(23185172-23185206)
chr2 (21-55)||(23596435-23596469)
chr2 (13-70)||(24376327-24376384)
chr2 (3-55)||(22188932-22188983)
chr2 (3-55)||(25828378-25828429)
chr2 (16-55)||(18377060-18377099)
chr2 (12-55)||(21538020-21538063)
chr2 (24-55)||(28551765-28551796)
chr2 (21-55)||(16494570-16494604)
chr2 (12-54)||(38780621-38780663)
chr2 (3-52)||(10010575-10010623)
chr2 (3-32)||(22316839-22316868)
chr2 (12-44)||(20152827-20152859)
chr2 (3-55)||(31801710-31801761)
chr2 (3-55)||(38630973-38631024)
[»] chr1 (28 HSPs)
chr1 (3-55)||(2833880-2833931)
chr1 (12-55)||(12283618-12283661)
chr1 (3-55)||(1899571-1899622)
chr1 (3-55)||(20959834-20959885)
chr1 (11-55)||(21121863-21121906)
chr1 (11-55)||(21135969-21136012)
chr1 (3-55)||(36133435-36133486)
chr1 (20-55)||(21205676-21205711)
chr1 (20-55)||(21215491-21215526)
chr1 (12-55)||(22153050-22153093)
chr1 (12-55)||(22600998-22601041)
chr1 (12-55)||(33257180-33257223)
chr1 (12-55)||(33277352-33277395)
chr1 (3-52)||(14294086-14294134)
chr1 (21-54)||(26555597-26555630)
chr1 (3-55)||(22202685-22202736)
chr1 (3-55)||(22428142-22428193)
chr1 (3-55)||(29215024-29215075)
chr1 (3-55)||(30892289-30892340)
chr1 (3-51)||(38281591-38281638)
chr1 (3-34)||(14264232-14264263)
chr1 (21-55)||(19214834-19214868)
chr1 (21-70)||(21192703-21192752)
chr1 (3-55)||(1577073-1577124)
chr1 (27-55)||(16233946-16233974)
chr1 (3-55)||(23037327-23037378)
chr1 (27-55)||(27858010-27858038)
chr1 (19-55)||(32786757-32786793)
[»] scaffold0530 (1 HSPs)
scaffold0530 (12-55)||(2856-2899)
[»] scaffold0146 (1 HSPs)
scaffold0146 (12-55)||(14340-14383)
[»] scaffold0084 (2 HSPs)
scaffold0084 (3-70)||(48527-48593)
scaffold0084 (17-55)||(31815-31853)
[»] scaffold0056 (2 HSPs)
scaffold0056 (11-70)||(26491-26549)
scaffold0056 (11-54)||(35585-35627)
[»] scaffold0022 (2 HSPs)
scaffold0022 (12-55)||(36655-36698)
scaffold0022 (12-55)||(134715-134758)
[»] scaffold0005 (1 HSPs)
scaffold0005 (3-70)||(211570-211636)
[»] scaffold0567 (1 HSPs)
scaffold0567 (3-55)||(9124-9175)
[»] scaffold0205 (1 HSPs)
scaffold0205 (3-55)||(786-837)
[»] scaffold0163 (1 HSPs)
scaffold0163 (3-70)||(25639-25705)
[»] scaffold0161 (2 HSPs)
scaffold0161 (12-51)||(10950-10989)
scaffold0161 (12-51)||(15614-15653)
[»] scaffold0004 (2 HSPs)
scaffold0004 (12-55)||(378393-378436)
scaffold0004 (3-55)||(219465-219516)
[»] scaffold0359 (1 HSPs)
scaffold0359 (12-70)||(6566-6624)
[»] scaffold0138 (1 HSPs)
scaffold0138 (13-55)||(16212-16254)
[»] scaffold0859 (1 HSPs)
scaffold0859 (14-55)||(2195-2236)
[»] scaffold0488 (1 HSPs)
scaffold0488 (11-55)||(11425-11468)
[»] scaffold0439 (1 HSPs)
scaffold0439 (3-55)||(7543-7593)
[»] scaffold0330 (1 HSPs)
scaffold0330 (3-55)||(505-556)
[»] scaffold0036 (1 HSPs)
scaffold0036 (3-55)||(111434-111485)
[»] scaffold0035 (1 HSPs)
scaffold0035 (11-55)||(20306-20350)
[»] scaffold0023 (1 HSPs)
scaffold0023 (3-55)||(102781-102832)
[»] scaffold0018 (1 HSPs)
scaffold0018 (12-55)||(50510-50553)
[»] scaffold0011 (1 HSPs)
scaffold0011 (20-55)||(66254-66289)
[»] scaffold0498 (1 HSPs)
scaffold0498 (21-55)||(1058-1092)
[»] scaffold0290 (1 HSPs)
scaffold0290 (12-70)||(19496-19554)
[»] scaffold0280 (1 HSPs)
scaffold0280 (20-70)||(3532-3582)
[»] scaffold0081 (1 HSPs)
scaffold0081 (21-55)||(13220-13254)
[»] scaffold0040 (1 HSPs)
scaffold0040 (21-55)||(2919-2953)
[»] scaffold1747 (1 HSPs)
scaffold1747 (21-70)||(532-581)
[»] scaffold1745 (1 HSPs)
scaffold1745 (21-70)||(830-879)
[»] scaffold0607 (1 HSPs)
scaffold0607 (20-57)||(5357-5394)
[»] scaffold0115 (1 HSPs)
scaffold0115 (3-53)||(17557-17608)
[»] scaffold1359 (1 HSPs)
scaffold1359 (3-55)||(40-91)
[»] scaffold0037 (1 HSPs)
scaffold0037 (27-55)||(87121-87149)
[»] scaffold0026 (1 HSPs)
scaffold0026 (3-47)||(7113-7156)


Alignment Details
Target: scaffold0251 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 182 - 373
Target Start/End: Complemental strand, 6929 - 6742
Alignment:
Q  182 atgagggtgttgtcaaacaggtggataacgagtatttcacgagcgtttggaacgatatttgggtggaagacactatatatataaggtcaaaggtttatgg 281  Q
    ||||| |||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||| ||| ||||| ||    ||||||||||||||| |    
T  6929 atgagtgtgttgtcaaaccggtgggtaacgtgtatttcacgagcgcttggaacgatatttgggtggtagatactatcta----aggtcaaaggtttatag 6834  T
Q  282 gcttttgttggtctatgaacaaaaatactatggttgcgcaatgttgacattgtgagtcgaacaagtctgtgtgacagtttgttaggacgaag 373  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6833 gcttttgttggtctatgaacaaaaagactttggttgcgcaatgttgacattgtgagtcgaacaagtctgtgtgactgtttgttaggacgaag 6742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 7107 - 7040
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  7107 gatcagtgtttttcagcttccgagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 7040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 83638 - 83575
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttct 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  83638 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttct 83575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 83574 - 83522
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  83574 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 83522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 21932146 - 21932097
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaatt 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21932146 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaatt 21932097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 17796687 - 17796636
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  17796687 gatcagtgtttt-cagcttaggagaaaaagaagaaaaagccaacacaattcaa 17796636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 25163341 - 25163290
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  25163341 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagctaacacaattcaa 25163290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 30422311 - 30422362
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  30422311 gatcagtgtttt-cagcttaggagaaaaagaagaaaaagcaaacacaattcaa 30422362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 12758623 - 12758674
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  12758623 gatcagtgtttt-cagtttaggagaaaacgaagaaaaagctaacacaattcaa 12758674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 17541370 - 17541421
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  17541370 gatcagtgtttt-cagcttaggagaaaatgaagaaaaaactaacacaattcaa 17541421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 19153294 - 19153243
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| |||||| |||||||||||||||||    
T  19153294 gatcagtgtttt-cagcttaggagaaaacgaagaataagctaacacaattcaa 19153243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 23264508 - 23264559
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||||| ||||||||||||    
T  23264508 gatcagtgtttt-cagcttaggagaaaaggaagaaaaagccaacacaattcaa 23264559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 45539365 - 45539416
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||||||||||||||  ||||||||||||    
T  45539365 gatcagtgtttt-cagcttaggagaaaaagaagaaaaagaaaacacaattcaa 45539416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 18122021 - 18122064
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||    
T  18122021 ttttcagctaaggagaaaaagaagaaaaagccaacacaattcaa 18122064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 17914376 - 17914338
Alignment:
Q  14 ttcagcttaggagaaaaagaagaaaaagctaacacaatt 52  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  17914376 ttcagcttaggagaaaacgaagaaaaagctaacacaatt 17914338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 19957235 - 19957284
Alignment:
Q  21 taggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||| |||||||||||||||||||||||| |  |||||||||||    
T  19957235 taggagaaaacgaagaaaaagctaacacaattcaatctccccttcttgtg 19957284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 16206501 - 16206458
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaaca 47  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||    
T  16206501 gatcagtgtttt-cagcttaggagaaaaagaagaaaaagccaaca 16206458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 17007580 - 17007529
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||| | ||||||||||||    
T  17007580 gatcagtgtttt-cagcttaggagaaaacgaagaaaaaacaaacacaattcaa 17007529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 23185627 - 23185678
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| |||||||| |||||||||||||||| | ||||||||||||    
T  23185627 gatcagtgtttt-cagcttagaagaaaaagaagaaaaaaccaacacaattcaa 23185678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 14990984 - 14991019
Alignment:
Q  20 ttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14990984 ttaggagaaaaagaagaaaaagccaacacaattcaa 14991019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 15336983 - 15337018
Alignment:
Q  20 ttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||||||| ||||||||||||    
T  15336983 ttaggagaaaaagaagaaaaagcaaacacaattcaa 15337018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 15426048 - 15426083
Alignment:
Q  20 ttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||||||| ||||||||||||    
T  15426048 ttaggagaaaaagaagaaaaagcaaacacaattcaa 15426083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 15517352 - 15517387
Alignment:
Q  20 ttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||||||| ||||||||||||    
T  15517352 ttaggagaaaaagaagaaaaagcaaacacaattcaa 15517387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 19942498 - 19942455
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||| ||||||||||| |||| |||||||    
T  19942498 ttttcagcttaggagaaaacgaagaaaaagccaacataattcaa 19942455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 22662326 - 22662291
Alignment:
Q  20 ttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||||||| ||||||||||||    
T  22662326 ttaggagaaaaagaagaaaaagccaacacaattcaa 22662291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 25850888 - 25850930
Alignment:
Q  27 aaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||    
T  25850888 aaaaagaagaaaaagctaacacaattc-aacctcccttcttgtg 25850930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 39692803 - 39692760
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||| |||||||||  |||||||||||||    
T  39692803 ttttcagcttaggagaaaacgaagaaaaaattaacacaattcaa 39692760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 13431520 - 13431550
Alignment:
Q  25 agaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||||||    
T  13431520 agaaaaagaagaaaaagctaacacaattcaa 13431550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 16188531 - 16188489
Alignment:
Q  13 tttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||| |||||||| ||||| ||||||||||||||    
T  16188531 tttcagcttaggaaaaaaagaataaaaaactaacacaattcaa 16188489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 19706766 - 19706732
Alignment:
Q  21 taggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||| ||||||||||||||||||||||||    
T  19706766 taggagaaaacgaagaaaaagctaacacaattcaa 19706732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 16682142 - 16682175
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaa 45  Q
    ||||||||||||||||||| ||||||||||||||    
T  16682142 ttttcagcttaggagaaaacgaagaaaaagctaa 16682175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 1210604 - 1210632
Alignment:
Q  27 aaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||||    
T  1210604 aaaaagaagaaaaagctaacacaattcaa 1210632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Complemental strand, 33052243 - 33052215
Alignment:
Q  27 aaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||||    
T  33052243 aaaaagaagaaaaagctaacacaattcaa 33052215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 40846308 - 40846336
Alignment:
Q  27 aaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||||    
T  40846308 aaaaagaagaaaaagctaacacaattcaa 40846336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 90295 - 90347
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  90295 gatcagtgtttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 90347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 13736968 - 13737019
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  13736968 gatcagtgtttt-cagtttaggagaaaaagaagaaaaagctaacacaattcaa 13737019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 6498581 - 6498538
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  6498581 ttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 6498538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 23413846 - 23413889
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  23413846 ttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 23413889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 9399483 - 9399541
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| | ||| ||||||||    
T  9399483 ttttcagcttaggagaaaatgaagaaaaaactaacacaattcaaccctcctttcttgtg 9399541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 35932885 - 35932934
Alignment:
Q  21 taggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    ||||||||||||||||||||||||||||||||||| |  |||||||||||    
T  35932885 taggagaaaaagaagaaaaagctaacacaattcaacctccccttcttgtg 35932934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 7746558 - 7746609
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||||| ||||||||||||    
T  7746558 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagcaaacacaattcaa 7746609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 21100612 - 21100663
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  21100612 gatcagtgtttt-cagcttaggagaaaatgaagaaaaaactaacacaattcaa 21100663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 22000889 - 22000940
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||| ||||    
T  22000889 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagctaacacaactcaa 22000940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 33932542 - 33932476
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||||| |||||||| ||||||| |||||||||| |||||||||||| |  |||||||||||    
T  33932542 gatcagtgtttt-cagcttagaagaaaaaaaagaaaaagccaacacaattcaacccccccttcttgtg 33932476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 17814230 - 17814172
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||||| |||||| ||||||||| ||||||||||||||   ||||||||||||    
T  17814230 ttttcagcttagaagaaaacgaagaaaaaactaacacaattcaactctcccttcttgtg 17814172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 31146482 - 31146516
Alignment:
Q  21 taggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||||||||||    
T  31146482 taggagaaaaagaagaaaaagctaacacaattcaa 31146516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 6513292 - 6513343
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||| ||||||| ||||||||||| ||||||||||||    
T  6513292 gatcagtgtttt-cagcttaagagaaaacgaagaaaaagccaacacaattcaa 6513343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 10848031 - 10847995
Alignment:
Q  20 ttaggagaaaaagaagaaaaagctaacacaattcaaa 56  Q
    ||||||||||||||||||||| |||||||||||||||    
T  10848031 ttaggagaaaaagaagaaaaacctaacacaattcaaa 10847995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 11993163 - 11993113
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  11993163 gatcagtgttttt-ag-ttaggagaaaaagaagaaaaagcaaacacaattcaa 11993113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 21076056 - 21076096
Alignment:
Q  15 tcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  21076056 tcagcttaggagaaaacgaagaaaaagctaacataattcaa 21076096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 31487483 - 31487432
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||| | ||||||||||||    
T  31487483 gatcagtgtttt-cagcttaggagaaaacgaagaaaaaaccaacacaattcaa 31487432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 12353733 - 12353776
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||  |||||||||| |||||||||||||    
T  12353733 ttttcagcttaggagaaatcgaagaaaaagttaacacaattcaa 12353776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 15516227 - 15516192
Alignment:
Q  20 ttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||||||| ||||||||||||    
T  15516227 ttaggagaaaaagaagaaaaagccaacacaattcaa 15516192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 37395434 - 37395391
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||    
T  37395434 ttttcagcttaggagaagaagaagaaaaagtaaacacaattcaa 37395391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 21199890 - 21199924
Alignment:
Q  21 taggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||| ||||||||||||||||||||||||    
T  21199890 taggagaaaacgaagaaaaagctaacacaattcaa 21199924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 25770525 - 25770553
Alignment:
Q  27 aaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||||    
T  25770525 aaaaagaagaaaaagctaacacaattcaa 25770553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 26120704 - 26120732
Alignment:
Q  27 aaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||||    
T  26120704 aaaaagaagaaaaagctaacacaattcaa 26120732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 31117150 - 31117099
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||||  ||||| ||||||    
T  31117150 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagtaaacactattcaa 31117099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 31143360 - 31143388
Alignment:
Q  26 gaaaaagaagaaaaagctaacacaattca 54  Q
    |||||||||||||||||||||||||||||    
T  31143360 gaaaaagaagaaaaagctaacacaattca 31143388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 31589879 - 31589907
Alignment:
Q  27 aaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||||    
T  31589879 aaaaagaagaaaaagctaacacaattcaa 31589907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 28581373 - 28581321
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28581373 gatcaatgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 28581321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 15902472 - 15902421
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15902472 gatcagtgtttt-cagcttaggagaaaaagaagaaaaagctaacacaattcaa 15902421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 20628350 - 20628393
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  20628350 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 20628393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 29854680 - 29854622
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |  |||||||||||    
T  29854680 ttttcagtttaggagaaaaagaagaaaaagctaacacaattcaacctccccttcttgtg 29854622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 14954687 - 14954636
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  14954687 gatcagtgtttt-cagcttaggagaaaaagaagaaaaagccaacacaattcaa 14954636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 14968646 - 14968595
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  14968646 gatcagtgtttt-cagcttaggagaaaaagaagaaaaagccaacacaattcaa 14968595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 29952317 - 29952368
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  29952317 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagctaacacaattcaa 29952368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 30001471 - 30001522
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  30001471 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagctaacacaattcaa 30001522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 49643644 - 49643695
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  49643644 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagctaacacaattcaa 49643695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 6090005 - 6089940
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||||| ||||||||||||||| || ||||||||||||||||||| ||| ||||||||||||    
T  6090005 gatcagtgtttt-cagcttaggagaaaacgatgaaaaagctaacacaattc-aacctcccttcttgtg 6089940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 17239817 - 17239860
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  17239817 ttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 17239860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 38178533 - 38178576
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  38178533 ttttcagcttaggagaaaaagaagaaaaagccaacacaattcaa 38178576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 1241955 - 1242006
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||||||||||||| | ||||||||||||    
T  1241955 gatcagtgtttt-cagcttaggagaaaaagaagaaaaaaccaacacaattcaa 1242006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 12727116 - 12727167
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  12727116 gatcagtgtttt-cagcttaggagaaaacgaaaaaaaagctaacacaattcaa 12727167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 13781466 - 13781517
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||  ||||||||||||||| ||||||||||||||||||||||||    
T  13781466 gatcagtgtttc-cagcttaggagaaaacgaagaaaaagctaacacaattcaa 13781517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 14393875 - 14393926
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| || |||||||||||| ||||||||||||||||||||||||    
T  14393875 gatcagtgtttt-caacttaggagaaaacgaagaaaaagctaacacaattcaa 14393926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 17667647 - 17667596
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  17667647 gatcagtgtttt-cagcttaggagaaaatgaagaaaaaactaacacaattcaa 17667596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 40799167 - 40799116
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||||||||||||||  ||||||||||||    
T  40799167 gatcagtgtttt-cagcttaggagaaaaagaagaaaaagaaaacacaattcaa 40799116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 12963974 - 12964017
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||    
T  12963974 ttttcagctgaggagaaaatgaagaaaaagctaacacaattcaa 12964017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 13939165 - 13939122
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||  |||||||||||||||||||||||    
T  13939165 ttttcagcttaggagaaaacaaagaaaaagctaacacaattcaa 13939122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 19889827 - 19889870
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||| |||||||||||||||| |||||||    
T  19889827 ttttcagcttaggagaaaacgaagaaaaagctaacaaaattcaa 19889870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 49554398 - 49554441
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||||||||||||| | ||||||||||||    
T  49554398 ttttcagcttaggagaaaaagaagaaaaaaccaacacaattcaa 49554441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 52283072 - 52283006
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||||| ||||||||||||||||||| ||||||  |||||||||||| |  |||||||||||    
T  52283072 gatcagtgtttt-cagcttaggagaaaaagaataaaaagtcaacacaattcaacccccccttcttgtg 52283006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 52919701 - 52919651
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattca 54  Q
    |||||||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  52919701 gatcagtgtttt-cagcttaggagaaaacgaagaaaaaactaacacaattca 52919651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 46350729 - 46350787
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||| |||||||||||||||||||||||  |||||||||||| | || |||||||||    
T  46350729 ttttcaacttaggagaaaaagaagaaaaagtcaacacaattcaatcctctcttcttgtg 46350787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 11189270 - 11189219
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| || |||||||||||||||||||||| | ||||||||||||    
T  11189270 gatcagtgtttt-catcttaggagaaaaagaagaaaaaaccaacacaattcaa 11189219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 13823347 - 13823296
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| | ||||||||||||||||||||||| | ||||||||||||    
T  13823347 gatcagtgtttt-cggcttaggagaaaaagaagaaaaatccaacacaattcaa 13823296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 18122528 - 18122579
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| |||| |||||||||||| ||||||| ||||||||||||||    
T  18122528 gatcagtgtttt-cagcgtaggagaaaaaggagaaaaaactaacacaattcaa 18122579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 20645431 - 20645380
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| || ||||| |||||| ||||||||||||||||||||||||    
T  20645431 gatcagtgtttt-caacttagaagaaaacgaagaaaaagctaacacaattcaa 20645380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 31302626 - 31302575
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| |||| |||||||||||||||||||| | ||||||||||||    
T  31302626 gatcagtgtttt-cagcataggagaaaaagaagaaaaaaccaacacaattcaa 31302575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 40850247 - 40850204
Alignment:
Q  11 tttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||    
T  40850247 tttttcag-ttaggagaaaaagaagaaaaaactaacacaattcaa 40850204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 41494279 - 41494229
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||||| ||||||||||||    
T  41494279 gatcagtgtttt-cagcttaggagaaaa-gaagaaaaagccaacacaattcaa 41494229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 19885966 - 19886009
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||    
T  19885966 ttttcagcttaggagaaaacgaagaaaaagataacacatttcaa 19886009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 21639177 - 21639212
Alignment:
Q  20 ttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||||||| ||||||||||||    
T  21639177 ttaggagaaaaagaagaaaaagccaacacaattcaa 21639212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 22465376 - 22465411
Alignment:
Q  20 ttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||| ||||||||||||||||||||||||    
T  22465376 ttaggagaaaaggaagaaaaagctaacacaattcaa 22465411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 16031771 - 16031729
Alignment:
Q  13 tttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||||  | ||||||||||    
T  16031771 tttcagcttaggagaaaaagaagaaaaagaaatcacaattcaa 16031729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 22140267 - 22140233
Alignment:
Q  21 taggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||| ||||||||||||    
T  22140267 taggagaaaaagaagaaaaagcaaacacaattcaa 22140233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 49669381 - 49669430
Alignment:
Q  20 ttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    ||||||||||||||||||||| | |||||||||| ||| ||||||||||||    
T  49669381 ttaggagaaaaagaagaaaaaacgaacacaattc-aacctcccttcttgtg 49669430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 12967574 - 12967541
Alignment:
Q  22 aggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||| ||||||||||||||||||||||||    
T  12967574 aggagaaaacgaagaaaaagctaacacaattcaa 12967541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 8875005 - 8875056
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| |||||||||| |||| ||||||||| | ||||||||||||    
T  8875005 gatcagtgtttt-cagcttaggaaaaaacgaagaaaaaaccaacacaattcaa 8875056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 11222073 - 11222004
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaaga---agaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||||| ||||||||||||| ||||   ||||||||| |||||||||||| |  |||||||||||    
T  11222073 gatcagtgtttt-cagcttaggagaagaagatgaagaaaaagccaacacaattcaacccccccttcttgtg 11222004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 13410965 - 13410993
Alignment:
Q  27 aaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||||    
T  13410965 aaaaagaagaaaaagctaacacaattcaa 13410993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Complemental strand, 13698612 - 13698584
Alignment:
Q  27 aaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||||    
T  13698612 aaaaagaagaaaaagctaacacaattcaa 13698584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 30055064 - 30055107
Alignment:
Q  11 tttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||| ||||||||||||||| ||||| ||||||||||||||    
T  30055064 tttttcag-ttaggagaaaaagaaaaaaaaactaacacaattcaa 30055107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 45)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 23280858 - 23280925
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| | |  |||||||||||    
T  23280858 gatcagtgtttttcagcttaggagaaaaagaagaaaaatctaacacaattctacccccccttcttgtg 23280925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 15467190 - 15467137
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaac 57  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  15467190 gatcagtgtttt-cagcttaggagaaaaagaagaaaaagataacacaattcaaac 15467137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 4493819 - 4493768
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  4493819 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagctaacacaattcaa 4493768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 16546220 - 16546271
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  16546220 gatcagtgtttt-cagcttaggagaaaaagaagaaaaagccaacacaattcaa 16546271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 16619442 - 16619391
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  16619442 gatcagtgtttt-cagcttaggagaaaaagaagaaaaagccaacacaattcaa 16619391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 33692605 - 33692657
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||| |||||||||||||||||||||| |||||||||| |||||||||||||    
T  33692605 gatcaatgtttttcagcttaggagaaaaggaagaaaaagttaacacaattcaa 33692657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 13645718 - 13645675
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  13645718 ttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 13645675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 13731567 - 13731610
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  13731567 ttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 13731610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 1292312 - 1292262
Alignment:
Q  20 ttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||||||||||||||||||||||||||||| |  |||||||||||    
T  1292312 ttaggagaaaaagaagaaaaagctaacacaattcaacctccccttcttgtg 1292262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 30025201 - 30025143
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    ||||||||||||||||||| ||||||||||| |||||||||||| |  |||||||||||    
T  30025201 ttttcagcttaggagaaaacgaagaaaaagcaaacacaattcaacccccccttcttgtg 30025143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 28623246 - 28623287
Alignment:
Q  14 ttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  28623246 ttcagcttaggagaaaaagaagaaaaagccaacacaattcaa 28623287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 9710717 - 9710768
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||||||||||||||||  |||||| ||||||||||||    
T  9710717 gatcagtgtttttcagcttaggagaaaaagaa-taaaagcaaacacaattcaa 9710768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 10884053 - 10884104
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  10884053 gatcagtgtttt-cagcttaggagaaaacaaagaaaaagctaacacaattcaa 10884104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 16315420 - 16315471
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  16315420 gatcagtgtttt-cagcttaggagaaaacgaagaaaaacctaacacaattcaa 16315471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 16557493 - 16557544
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  16557493 gatcagtgtttt-cagcttaggagataaagaagaaaaagccaacacaattcaa 16557544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 16608169 - 16608118
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  16608169 gatcagtgtttt-cagcttaggagataaagaagaaaaagccaacacaattcaa 16608118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 19328893 - 19328944
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||||||||||    
T  19328893 gatcagtgtttt-cagctttggagaaaaagaagaaaaagccaacacaattcaa 19328944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 22580137 - 22580188
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| |||| |||||||||||||||||||||| ||||||||||||    
T  22580137 gatcagtgtttt-cagcataggagaaaaagaagaaaaagccaacacaattcaa 22580188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 33604179 - 33604128
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||||| ||||||||||||    
T  33604179 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagccaacacaattcaa 33604128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 35954794 - 35954845
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||||||||||||||  ||||||||||||    
T  35954794 gatcagtgtttt-cagcttaggagaaaaagaagaaaaagtcaacacaattcaa 35954845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 2499295 - 2499252
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||| |||||||||| |||||||||||||    
T  2499295 ttttcagcttaggagaaaatgaagaaaaagttaacacaattcaa 2499252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 13302128 - 13302085
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  13302128 ttttcagcttaggagaaaacgaagaaaaaactaacacaattcaa 13302085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 14186961 - 14186895
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||||| |||| |||||||||||||||||||||  |||||||||||| |  |||||||||||    
T  14186961 gatcagtgtttt-cagcctaggagaaaaagaagaaaaagtaaacacaattcaacccccccttcttgtg 14186895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 2914539 - 2914603
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgt 69  Q
    |||||||||||| ||||||||||||||  |||||||||||||||||||||||| |  ||||||||||    
T  2914539 gatcagtgtttt-cagcttaggagaaac-gaagaaaaagctaacacaattcaatctccccttcttgt 2914603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 13027842 - 13027899
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    ||||| ||||||||||||| ||||||||||| |||||||||| ||| ||||||||||||    
T  13027842 ttttcggcttaggagaaaatgaagaaaaagcaaacacaattc-aacctcccttcttgtg 13027899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 15574506 - 15574556
Alignment:
Q  20 ttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    ||||||||||||||||||||||| |||||||||||| |  |||||||||||    
T  15574506 ttaggagaaaaagaagaaaaagccaacacaattcaacccccccttcttgtg 15574556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 13902553 - 13902601
Alignment:
Q  21 taggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||| |||||||||||||||||||||| ||| ||||||||||||    
T  13902553 taggagaaaacgaagaaaaagctaacacaattc-aacctcccttcttgtg 13902601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 11792145 - 11792094
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| || |||||||||||| |||||||||| |||||||||||||    
T  11792145 gatcagtgtttt-caacttaggagaaaacgaagaaaaagataacacaattcaa 11792094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 12367640 - 12367691
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| || |||||||||||| |||||||||| |||||||||||||    
T  12367640 gatcagtgtttt-caccttaggagaaaacgaagaaaaagataacacaattcaa 12367691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 13879418 - 13879367
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| |||| || ||||||||||||||||||| ||||||||||||    
T  13879418 gatcagtgtttt-cagcataagagaaaaagaagaaaaagcaaacacaattcaa 13879367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 21691699 - 21691648
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| | ||||||||| ||||||||||||    
T  21691699 gatcagtgtttt-cagcttaggagaaaatgtagaaaaagccaacacaattcaa 21691648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 41843305 - 41843356
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||| ||||||| |||||||||| |||||||||||||    
T  41843305 gatcagtgtttt-cagcttaagagaaaacgaagaaaaaggtaacacaattcaa 41843356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 48237718 - 48237769
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||| ||||||||||||||||||  ||||||||||||    
T  48237718 gatcagtgtttt-cagcttaagagaaaaagaagaaaaagtcaacacaattcaa 48237769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 5001754 - 5001793
Alignment:
Q  13 tttcagcttaggagaaaaagaagaaaaagctaacacaatt 52  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  5001754 tttcagcttaggagaaaacgaagaaaaagctaacataatt 5001793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 13138816 - 13138859
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||| || ||||||||||||||||||| ||||||||||||    
T  13138816 ttttcagcataagagaaaaagaagaaaaagccaacacaattcaa 13138859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 13681562 - 13681519
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||| ||||||||| |||||| |||||||    
T  13681562 ttttcagcttaggagaaaacgaagaaaaatctaacataattcaa 13681519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 15705392 - 15705427
Alignment:
Q  20 ttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||||||| ||||||||||||    
T  15705392 ttaggagaaaaagaagaaaaagccaacacaattcaa 15705427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 33421014 - 33420979
Alignment:
Q  20 ttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||||||| ||||||||||||    
T  33421014 ttaggagaaaaagaagaaaaagccaacacaattcaa 33420979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 13261568 - 13261609
Alignment:
Q  14 ttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||| ||||||||||  ||||||||||||    
T  13261568 ttcagcttaggagaaaacgaagaaaaagaaaacacaattcaa 13261609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 44466347 - 44466302
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaac 57  Q
    ||||| |||| |||||||||||||||||| | ||||||||||||||    
T  44466347 ttttcggcttcggagaaaaagaagaaaaaaccaacacaattcaaac 44466302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 13034736 - 13034803
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaag-aaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||||| ||||||||||||||| |||| |||||  ||||||||||||| |  |||||||||||    
T  13034736 gatcagtgtttt-cagcttaggagaaaatgaagaaaaaaaataacacaattcaacccccccttcttgtg 13034803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 13259337 - 13259377
Alignment:
Q  15 tcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||| ||||||||||  ||||||||||||    
T  13259337 tcagcttaggagaaaacgaagaaaaagaaaacacaattcaa 13259377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 13473370 - 13473420
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||| || |||||||||||    
T  13473370 gatcagtgtttt-cagcttaggagaaaacgaagaaaaaact-acacaattcaa 13473420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 14424582 - 14424531
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||| || ||||||||||| ||||||||||  ||||||||||||    
T  14424582 gatcagtgttttt-agattaggagaaaacgaagaaaaagtaaacacaattcaa 14424531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Complemental strand, 16812293 - 16812265
Alignment:
Q  27 aaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||||    
T  16812293 aaaaagaagaaaaagctaacacaattcaa 16812265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 10631412 - 10631346
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| ||||||||    
T  10631412 gatcagtgtttt-cagcttaggagaaaaagaagaaaaagctaacacaattcaaccctccattcttgtg 10631346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 15532504 - 15532555
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15532504 gatcagtgtttt-cagcttaggagaaaaagaagaaaaagctaacacaattcaa 15532555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 17380838 - 17380772
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||| |  |||||||||||    
T  17380838 gatcagtgtttt-cagcttaggagaaaaagaagaaaaagccaacacaattcaacccccccttcttgtg 17380772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 21624367 - 21624301
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||| |  |||||||||||    
T  21624367 gatcagtgtttt-cagcttaggagaaaaagaagaaaaagccaacacaattcaacccccccttcttgtg 21624301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 29537888 - 29537830
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    ||||||||||||||| ||| ||||||||| |||||||||||||| ||||||||||||||    
T  29537888 ttttcagcttaggagtaaacgaagaaaaaactaacacaattcaaccatcccttcttgtg 29537830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 14732989 - 14733040
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  14732989 gatcagtgttttt-agcttaggagaaaacgaagaaaaagctaacacaattcaa 14733040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 15301493 - 15301442
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  15301493 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagctaacacaattcaa 15301442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 21234431 - 21234380
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  21234431 gatcagtgtttt-cagcttaggagaaaaagaggaaaaagctaacacaattcaa 21234380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 32543538 - 32543487
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  32543538 gatcagtgtttt-caggttaggagaaaaagaagaaaaagctaacacaattcaa 32543487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 14101326 - 14101369
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  14101326 ttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 14101369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 16528582 - 16528524
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||| |||||||||||| |||||||||||||||||||||||| |  |||||||||||    
T  16528582 ttttcaacttaggagaaaacgaagaaaaagctaacacaattcaacccccccttcttgtg 16528524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 18377694 - 18377637
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgt 69  Q
    ||||||||||| ||||||||||||||||||| |||||||||||| |  ||||||||||    
T  18377694 ttttcagcttatgagaaaaagaagaaaaagccaacacaattcaacccccccttcttgt 18377637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 9717101 - 9717035
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||||| || ||||||||||||||||||||| || |||||||||||| |  |||||||||||    
T  9717101 gatcagtgtttt-caacttaggagaaaaagaagaaaatgcaaacacaattcaacctccccttcttgtg 9717035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 20113516 - 20113559
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||    
T  20113516 ttttcagcttaggagaaaacgaagaaaaagcaaacacaattcaa 20113559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 13435160 - 13435109
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| |||||||||||||||  |||||||||| ||||||||||||    
T  13435160 gatcagtgtttt-cagcttaggagaaaacaaagaaaaagcaaacacaattcaa 13435109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 13601442 - 13601391
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| |||||||||||||||  |||||||||||||||| ||||||    
T  13601442 gatcagtgtttt-cagcttaggagaaaactaagaaaaagctaacacgattcaa 13601391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 19623262 - 19623211
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||| |||||||||||||| ||||||||||| |||| |||||||    
T  19623262 gatcagtgttttt-agcttaggagaaaacgaagaaaaagccaacataattcaa 19623211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 22801418 - 22801367
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||| || |||||||| |||||| |||||||||||||||||||||||    
T  22801418 gatcagtgttatt-agcttaggtgaaaaataagaaaaagctaacacaattcaa 22801367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 16332989 - 16332954
Alignment:
Q  20 ttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||||||| ||||||||||||    
T  16332989 ttaggagaaaaagaagaaaaagccaacacaattcaa 16332954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 19085399 - 19085356
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||| ||||||| ||||||||||| ||||||||||||    
T  19085399 ttttcagcttatgagaaaacgaagaaaaagccaacacaattcaa 19085356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 20731580 - 20731630
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattca 54  Q
    |||||||||||| |||||||| |||||||||| |||||| ||||||||||||    
T  20731580 gatcagtgtttt-cagcttagtagaaaaagaataaaaaggtaacacaattca 20731630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 24116090 - 24116047
Alignment:
Q  6 cagtgtttttcagcttaggagaaaaagaagaaaaagctaacaca 49  Q
    |||||||||||| |||||||||||| ||||||||||| ||||||    
T  24116090 cagtgtttttcaacttaggagaaaacgaagaaaaagccaacaca 24116047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 17304155 - 17304189
Alignment:
Q  21 taggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||| ||||||||||||||||||||||||    
T  17304155 taggagaaaacgaagaaaaagctaacacaattcaa 17304189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 12422501 - 12422468
Alignment:
Q  20 ttaggagaaaaagaagaaaaagctaacacaattc 53  Q
    ||||||||||||||||||||||| ||||||||||    
T  12422501 ttaggagaaaaagaagaaaaagccaacacaattc 12422468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 19066905 - 19066954
Alignment:
Q  21 taggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    ||||||||| | ||||||||||||||||||||||| |  |||||||||||    
T  19066905 taggagaaagaaaagaaaaagctaacacaattcaagccccccttcttgtg 19066954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 15395556 - 15395584
Alignment:
Q  27 aaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||||    
T  15395556 aaaaagaagaaaaagctaacacaattcaa 15395584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 25593346 - 25593296
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| |||||||||  |||||||||||||    
T  25593346 gatcagtgtttt-cagcttaggagaaaacgaagaaaaa-ataacacaattcaa 25593296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 18313 - 18261
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  18313 gatcagtgtttttcagcttaggagaaaaagaagaaaaagaaaacacaattcaa 18261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 763 - 829
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||||||||||||||||||||||||||||||||  |||| ||||| ||| ||||||||||||    
T  763 gatcagtgtttttcagcttaggagaaaaagaagaaaaagaaaacataattc-aacctcccttcttgtg 829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 898 - 832
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||||| ||||||||||||||| |||||||||| |||||||||||||||  |||||||||||    
T  898 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagttaacacaattcaaaccccccttcttgtg 832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 9243 - 9192
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  9243 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagctaacacaattcaa 9192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0315 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 7946 - 7895
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  7946 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagctaacacaattcaa 7895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 10072163 - 10072112
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  10072163 gatcagtgtttt-catcttaggagaaaaagaagaaaaagctaacacaattcaa 10072112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 12600028 - 12599977
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  12600028 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagctaacacaattcaa 12599977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 23120803 - 23120759
Alignment:
Q  11 tttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  23120803 tttttcagcttaggagaaaatgaagaaaaagctaacacaattcaa 23120759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 23749799 - 23749748
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  23749799 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagctaacacaattcaa 23749748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 24628733 - 24628784
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  24628733 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagctaacacaattcaa 24628784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 3792598 - 3792555
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  3792598 ttttcagcttaggagaaaaagaagaaaaagccaacacaattcaa 3792555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 14605742 - 14605808
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||||| ||||||||||||||| ||| |||||||||||||||||||| |  |||||||||||    
T  14605742 gatcagtgtttt-cagcttaggagaaaacgaataaaaagctaacacaattcaatccccccttcttgtg 14605808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 14905169 - 14905212
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  14905169 ttttcagcttaggagaaaaagaagaaaaagccaacacaattcaa 14905212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 22676396 - 22676446
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattca 54  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  22676396 gatcagtgtttt-cagcttaggagaaaaagaagaaaaagccaacacaattca 22676446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 29120641 - 29120575
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||||| ||||||||||||||||||||| ||||| |||||||||||| |  |||||||||||    
T  29120641 gatcagtgtttt-cagcttaggagaaaaagaagagaaagccaacacaattcaacccccccttcttgtg 29120575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 56033793 - 56033735
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    ||||||||||||||||||||||||||||| | |||||||||||| | ||| ||||||||    
T  56033793 ttttcagcttaggagaaaaagaagaaaaaaccaacacaattcaaccctccattcttgtg 56033735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 13576984 - 13577035
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||||||||||||||||  |||||| ||||||||||||    
T  13576984 gatcagtgtttttcagcttaggagaaaaagaa-taaaagcaaacacaattcaa 13577035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 19883962 - 19883915
Alignment:
Q  7 agtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  19883962 agtgttttt-agcttaggagaaaaagaagaaaaaactaacacaattcaa 19883915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 29681353 - 29681404
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||| ||||||    
T  29681353 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagctaacactattcaa 29681404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 44397482 - 44397431
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||| ||||||||||||||||||| ||||||||||||    
T  44397482 gatcagtgtttt-cagcttaagagaaaaagaagaaaaagccaacacaattcaa 44397431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 54679134 - 54679083
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||||||||||||||  ||||||||||||    
T  54679134 gatcagtgtttt-cagcttaggagaaaaagaagaaaaagaaaacacaattcaa 54679083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 3106267 - 3106302
Alignment:
Q  20 ttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||||||||||||||||||||    
T  3106267 ttaggagaaaaagaagaaaaagctaacacaattcaa 3106302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 10071769 - 10071726
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||| ||||||||||||||| |||||||||||||    
T  10071769 ttttcagcttaggaaaaaaagaagaaaaagataacacaattcaa 10071726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 19621834 - 19621877
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  19621834 ttttcatcttaggagaaaacgaagaaaaagctaacacaattcaa 19621877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 17399531 - 17399581
Alignment:
Q  20 ttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    ||||||||||||||||||||| |||||||||||||| |  |||||||||||    
T  17399531 ttaggagaaaaagaagaaaaacctaacacaattcaacccccccttcttgtg 17399581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 40859963 - 40859929
Alignment:
Q  21 taggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||||||||||    
T  40859963 taggagaaaaagaagaaaaagctaacacaattcaa 40859929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 19665634 - 19665593
Alignment:
Q  10 gtttttcagcttaggagaaaaagaagaaaaagctaacacaat 51  Q
    ||||||||||||||||||||| ||||||||| ||||||||||    
T  19665634 gtttttcagcttaggagaaaacgaagaaaaatctaacacaat 19665593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 16631712 - 16631661
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||| | ||||||||||||    
T  16631712 gatcagtgtttt-cagcttaggagaaaaggaagaaaaaaccaacacaattcaa 16631661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 37986449 - 37986500
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||| ||||||||||| ||||||||| ||||||||||||||    
T  37986449 gatcagtgtttt-cagtttaggagaaaacgaagaaaaaactaacacaattcaa 37986500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 36470182 - 36470139
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||| |||||||||||| |||||||||| |||||||||||||    
T  36470182 ttttcaacttaggagaaaacgaagaaaaagataacacaattcaa 36470139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 55379585 - 55379532
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaac 57  Q
    |||||||||||| ||||||||||||||| |||| |||| || |||||||||||||    
T  55379585 gatcagtgtttt-cagcttaggagaaaatgaaggaaaaactcacacaattcaaac 55379532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 17246883 - 17246847
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaa 40  Q
    |||||||||||| |||||||||||||||||||||||||    
T  17246883 gatcagtgtttt-cagcttaggagaaaaagaagaaaaa 17246847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 41115665 - 41115713
Alignment:
Q  21 taggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||| |||||||||| |||||||||||||||  |||||||||||    
T  41115665 taggagaaaacgaagaaaaagttaacacaattcaaac-ccccttcttgtg 41115713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 10329174 - 10329202
Alignment:
Q  27 aaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||||    
T  10329174 aaaaagaagaaaaagctaacacaattcaa 10329202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 17527237 - 17527265
Alignment:
Q  27 aaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||||    
T  17527237 aaaaagaagaaaaagctaacacaattcaa 17527265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 24575307 - 24575256
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  24575307 gatcagtgtttt-cagcttaggagaaaatgaagaaaaagctaacacaattcaa 24575256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 39038465 - 39038516
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  39038465 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagctaacacaattcaa 39038516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 22455784 - 22455850
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    ||||||||||||  |||||||||||||| |||||||||||||||||||||||| |  |||||||||||    
T  22455784 gatcagtgttttg-agcttaggagaaaacgaagaaaaagctaacacaattcaacccccccttcttgtg 22455850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 25188677 - 25188627
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattca 54  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  25188677 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagctaacacaattca 25188627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 27294766 - 27294700
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    ||||||||||||| |||||||||||||| ||||||||| |||||||||||||| |  |||||||||||    
T  27294766 gatcagtgttttt-agcttaggagaaaacgaagaaaaaactaacacaattcaacccccccttcttgtg 27294700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 13964808 - 13964859
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||||||||||||| | ||||||||||||    
T  13964808 gatcagtgtttt-cagcttaggagaaaaagaagaaaaaacaaacacaattcaa 13964859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 17964128 - 17964179
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| |||||||||| |||||||||||||    
T  17964128 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagttaacacaattcaa 17964179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 20569574 - 20569625
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| |||||||||| |||||||||||||    
T  20569574 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagttaacacaattcaa 20569625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 24851497 - 24851548
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||||| ||||||||||||    
T  24851497 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagcaaacacaattcaa 24851548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 28702049 - 28702100
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||||||||||||||  ||||||||||||    
T  28702049 gatcagtgtttt-cagcttaggagaaaaagaagaaaaagaaaacacaattcaa 28702100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 40780584 - 40780533
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  40780584 gatcagtgtttt-cagcttaggagaaaacgaagaaaaaactaacacaattcaa 40780533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 45087822 - 45087873
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||||||||||||||  ||||||||||||    
T  45087822 gatcagtgtttt-cagcttaggagaaaaagaagaaaaagaaaacacaattcaa 45087873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 24778606 - 24778540
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||||| ||||||||||| ||| ||||||||||| |||||||||||| |  |||||||||||    
T  24778606 gatcagtgtttt-cagcttaggagtaaacgaagaaaaagccaacacaattcaacccccccttcttgtg 24778540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 25917966 - 25917923
Alignment:
Q  27 aaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||||||||||||||||||||||||  |||||||||||    
T  25917966 aaaaagaagaaaaagctaacacaattcaaaccccccttcttgtg 25917923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 22257456 - 22257398
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||| |||||||| ||||||||||||||||||||| || |  |||||||||||    
T  22257456 ttttcagctttggagaaaatgaagaaaaagctaacacaattgaacccccccttcttgtg 22257398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 22782473 - 22782507
Alignment:
Q  21 taggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||||||||||    
T  22782473 taggagaaaaagaagaaaaagctaacacaattcaa 22782507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 22786488 - 22786533
Alignment:
Q  11 tttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaac 57  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||    
T  22786488 tttttcagct-aggataaaaagaagaaaaagctaacacaattcaaac 22786533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 23185172 - 23185206
Alignment:
Q  21 taggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||||||||||    
T  23185172 taggagaaaaagaagaaaaagctaacacaattcaa 23185206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 23596435 - 23596469
Alignment:
Q  21 taggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||||||||||    
T  23596435 taggagaaaaagaagaaaaagctaacacaattcaa 23596469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 24376384 - 24376327
Alignment:
Q  13 tttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||||||||||| |||||||||  ||||||||||||| |  |||||||||||    
T  24376384 tttcagcttaggagaaaacgaagaaaaacttaacacaattcaacccccccttcttgtg 24376327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 22188932 - 22188983
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| |||| |||||||||||||||||||| | ||||||||||||    
T  22188932 gatcagtgtttt-cagcataggagaaaaagaagaaaaaaccaacacaattcaa 22188983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 25828429 - 25828378
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||| | |||||||||||| |||||||||||||||| |||||||    
T  25828429 gatcagtgttttt-accttaggagaaaacgaagaaaaagctaacataattcaa 25828378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 18377060 - 18377099
Alignment:
Q  16 cagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  18377060 cagcttaggagaaaacgaagaaaaaactaacacaattcaa 18377099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 21538020 - 21538063
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||| ||||||| ||||||||||| ||||||||||||    
T  21538020 ttttcagcttaagagaaaacgaagaaaaagcaaacacaattcaa 21538063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 55
Target Start/End: Original strand, 28551765 - 28551796
Alignment:
Q  24 gagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||||||||||||||||    
T  28551765 gagaaaaagaagaaaaagctaacacaattcaa 28551796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 16494604 - 16494570
Alignment:
Q  21 taggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||| ||||||||    
T  16494604 taggagaaaaagaagaaaaagctaacccaattcaa 16494570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 38780663 - 38780621
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattca 54  Q
    ||||| ||||||||||||||||||||||| | |||||||||||    
T  38780663 ttttcggcttaggagaaaaagaagaaaaaaccaacacaattca 38780621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 10010575 - 10010623
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaatt 52  Q
    |||||||||||| ||||||||||||||| ||| ||||| |||||||||||    
T  10010575 gatcagtgtttt-cagcttaggagaaaacgaaaaaaaaactaacacaatt 10010623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 22316868 - 22316839
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaag 32  Q
    ||||||||||||||||||||||||||||||    
T  22316868 gatcagtgtttttcagcttaggagaaaaag 22316839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 20152827 - 20152859
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagcta 44  Q
    |||||| ||||||||||||||||||||||||||    
T  20152827 ttttcaacttaggagaaaaagaagaaaaagcta 20152859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 31801710 - 31801761
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| |||||||||| | |||||||||||| | ||||||||||||    
T  31801710 gatcagtgtttt-cagcttaggaaagaaagaagaaaaaaccaacacaattcaa 31801761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 38631024 - 38630973
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||| |||||| ||||||| |||||    
T  38631024 gatcagtgtttt-cagcttaggagaaaacgaaaaaaaagttaacacagttcaa 38630973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 2833931 - 2833880
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  2833931 gatcagtgtttt-cagcttaggagaaaaagaagaaaaagccaacacaattcaa 2833880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 12283661 - 12283618
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  12283661 ttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 12283618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 1899622 - 1899571
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||||||||||||||  ||||||||||||    
T  1899622 gatcagtgtttt-cagcttaggagaaaaagaagaaaaagtcaacacaattcaa 1899571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 20959834 - 20959885
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  20959834 gatcagtgtttt-cagcttaggagaaaacgaagaaaaaactaacacaattcaa 20959885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 21121863 - 21121906
Alignment:
Q  11 tttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  21121863 tttttcag-ttaggagaaaaagaagaaaaagctaacacaattcaa 21121906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 21135969 - 21136012
Alignment:
Q  11 tttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  21135969 tttttcag-ttaggagaaaaagaagaaaaagctaacacaattcaa 21136012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 36133486 - 36133435
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||| ||||||||||||||||||| ||||||||||||    
T  36133486 gatcagtgtttt-cagcttaagagaaaaagaagaaaaagccaacacaattcaa 36133435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 21205676 - 21205711
Alignment:
Q  20 ttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||||||||||||||||||||    
T  21205676 ttaggagaaaaagaagaaaaagctaacacaattcaa 21205711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 21215491 - 21215526
Alignment:
Q  20 ttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||||||||||||||||||||    
T  21215491 ttaggagaaaaagaagaaaaagctaacacaattcaa 21215526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 22153093 - 22153050
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||    
T  22153093 ttttcagctaaggagaaaaagaagaaaaagccaacacaattcaa 22153050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 22600998 - 22601041
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||    
T  22600998 ttttcaggttaggagaaaaagaagaaaaagccaacacaattcaa 22601041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 33257180 - 33257223
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||  ||||||||||||||||||||||||    
T  33257180 ttttcagcttaggagaaagcgaagaaaaagctaacacaattcaa 33257223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 33277352 - 33277395
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||  ||||||||||||||||||||||||    
T  33277352 ttttcagcttaggagaaagcgaagaaaaagctaacacaattcaa 33277395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 14294086 - 14294134
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaatt 52  Q
    |||||||||||| ||||||||||||||| ||||||||||| |||||||||    
T  14294086 gatcagtgtttt-cagcttaggagaaaatgaagaaaaagcaaacacaatt 14294134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 26555630 - 26555597
Alignment:
Q  21 taggagaaaaagaagaaaaagctaacacaattca 54  Q
    ||||||||||||||||||||||||||||||||||    
T  26555630 taggagaaaaagaagaaaaagctaacacaattca 26555597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 22202685 - 22202736
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||| ||||||||||| |||||||||| |||||||||||||    
T  22202685 gatcagtgtttt-cagtttaggagaaaacgaagaaaaagataacacaattcaa 22202736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 22428142 - 22428193
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||||||||||  ||||||||||||    
T  22428142 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagtaaacacaattcaa 22428193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 29215075 - 29215024
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| |||||||| |||||||||||||||| |||| |||||||||    
T  29215075 gatcagtgtttt-cagcttagaagaaaaagaagaaaaaactaatacaattcaa 29215024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 30892340 - 30892289
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| |||||||| |||||  ||||||||||||||||||||||||    
T  30892340 gatcagtgtttt-cagcttagaagaaatcgaagaaaaagctaacacaattcaa 30892289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 38281638 - 38281591
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaat 51  Q
    |||||||||||| ||||||||||||||| ||||||||||| ||||||||    
T  38281638 gatcagtgtttt-cagcttaggagaaaaggaagaaaaagccaacacaat 38281591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 34
Target Start/End: Original strand, 14264232 - 14264263
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaa 34  Q
    ||||||||||||||||||||||||||||||||    
T  14264232 gatcagtgtttttcagcttaggagaaaaagaa 14264263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 19214868 - 19214834
Alignment:
Q  21 taggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||| ||||||||||||    
T  19214868 taggagaaaaagaagaaaaagcaaacacaattcaa 19214834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 21192703 - 21192752
Alignment:
Q  21 taggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||| |||||||||||| ||||||||||| |  |||||||||||    
T  21192703 taggagaaaacgaagaaaaagcttacacaattcaacccccccttcttgtg 21192752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 1577124 - 1577073
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| |||| || ||||||||||||||||| | ||||||||||||    
T  1577124 gatcagtgtttt-cagcataagagaaaaagaagaaaaaaccaacacaattcaa 1577073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 16233946 - 16233974
Alignment:
Q  27 aaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||||    
T  16233946 aaaaagaagaaaaagctaacacaattcaa 16233974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 23037327 - 23037378
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||| || |||||||||||||||| ||| ||||||||    
T  23037327 gatcagtgtttt-cagcttatgataaaaagaagaaaaagccaacccaattcaa 23037378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Complemental strand, 27858038 - 27858010
Alignment:
Q  27 aaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||||    
T  27858038 aaaaagaagaaaaagctaacacaattcaa 27858010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 32786757 - 32786793
Alignment:
Q  19 cttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  32786757 cttaggagaaaaagaaaaaaaatctaacacaattcaa 32786793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0530 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 2856 - 2899
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  2856 ttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 2899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 14383 - 14340
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  14383 ttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 14340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 48593 - 48527
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||||  ||||||||||||||| |||||||||||||||||||||||| |  |||||||||||    
T  48593 gatcagtgtttc-cagcttaggagaaaatgaagaaaaagctaacacaattcaacccccccttcttgtg 48527  T

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Target: scaffold0084; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 31853 - 31815
Alignment:
Q  17 agcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  31853 agcttaggagaaaacgaagaaaaagctaacacaattcaa 31815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 26491 - 26549
Alignment:
Q  11 tttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |  |||||||||||    
T  26491 tttttcag-ttaggagaaaaagaagaaaaagctaacacaattcaacccccccttcttgtg 26549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 35585 - 35627
Alignment:
Q  11 tttttcagcttaggagaaaaagaagaaaaagctaacacaattca 54  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  35585 tttttcag-ttaggagaaaaagaagaaaaagctaacacaattca 35627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 36698 - 36655
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  36698 ttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 36655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 134758 - 134715
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  134758 ttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 134715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 211636 - 211570
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||||| ||||||||||||||| ||| |||||||||||||||||||| |  |||||||||||    
T  211636 gatcagtgtttt-cagcttaggagaaaacgaataaaaagctaacacaattcaatccccccttcttgtg 211570  T

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Target: scaffold0567 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 9175 - 9124
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||||||||    
T  9175 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagcttacacaattcaa 9124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 786 - 837
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| |||||||||||||| ||||||||||| |||||||||||||    
T  786 gatcagtgtttt-cagcttaggagaaatagaagaaaaagttaacacaattcaa 837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 25705 - 25639
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||||| ||||||||||||||| ||||||||||  |||||||||||| |  |||||||||||    
T  25705 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagtaaacacaattcaacccccccttcttgtg 25639  T

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Target: scaffold0161 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 10950 - 10989
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaat 51  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  10950 ttttcagcttaggagaaaacgaagaaaaagctaacacaat 10989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 15614 - 15653
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaat 51  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  15614 ttttcagcttaggagaaaacgaagaaaaagctaacacaat 15653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 378393 - 378436
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||    
T  378393 ttttcagattaggagaaaacgaagaaaaagctaacacaattcaa 378436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 219516 - 219465
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| ||| |||||  |||||||||||||    
T  219516 gatcagtgtttt-cagcttaggagaaaacgaaaaaaaaagtaacacaattcaa 219465  T

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Target: scaffold0359 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 6566 - 6624
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    ||||| ||||||||||||||||||||||||  |||||||||||| |  |||||||||||    
T  6566 ttttcggcttaggagaaaaagaagaaaaagaaaacacaattcaacccccccttcttgtg 6624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 16254 - 16212
Alignment:
Q  13 tttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||| ||||||| ||||||||||||||||    
T  16254 tttcagcttaggagaaaacgaagaaatagctaacacaattcaa 16212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0859 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 2236 - 2195
Alignment:
Q  14 ttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  2236 ttcagcttaggagaaaaagaagaaaaagaaaacacaattcaa 2195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 11468 - 11425
Alignment:
Q  11 tttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||    
T  11468 tttttcag-ttaggagaaaaagaagaaaaaactaacacaattcaa 11425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0439 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 7543 - 7593
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||| ||||||||||||||||||||||| ||||||||||||    
T  7543 gatcagtgtttt-cag-ttaggagaaaaagaagaaaaagccaacacaattcaa 7593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 505 - 556
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||||||||||||| | ||| ||||||||    
T  505 gatcagtgtttt-cagcttaggagaaaaagaagaaaaaaccaactcaattcaa 556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 111434 - 111485
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| |||||||||| | |||||||||||||| ||||||||||||    
T  111434 gatcagtgtttt-cagcttaggaaagaaagaagaaaaagccaacacaattcaa 111485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 20306 - 20350
Alignment:
Q  11 tttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||| |||||||||||||| ||||||||| ||||||||||||||    
T  20306 ttttttagcttaggagaaaacgaagaaaaaactaacacaattcaa 20350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 102832 - 102781
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||| ||||||||||||||| |||||||||| ||| |||||||||    
T  102832 gatcagtgtttt-cagcttaggagaaaacgaagaaaaagttaatacaattcaa 102781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 50553 - 50510
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||| ||||||||| |||||| |||||||    
T  50553 ttttcagcttaggagaaaacgaagaaaaaactaacataattcaa 50510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 66254 - 66289
Alignment:
Q  20 ttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||||||||||||| ||||||||||||    
T  66254 ttaggagaaaaagaagaaaaagccaacacaattcaa 66289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 1058 - 1092
Alignment:
Q  21 taggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||| ||||||||||||||||||||||||    
T  1058 taggagaaaacgaagaaaaagctaacacaattcaa 1092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 19496 - 19554
Alignment:
Q  12 ttttcagcttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||| || ||||||| ||||||||||| |||||||||||| |  |||||||||||    
T  19496 ttttcagcataagagaaaacgaagaaaaagccaacacaattcaacccccccttcttgtg 19554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 3532 - 3582
Alignment:
Q  20 ttaggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    ||||||||||||||||||||||  |||||||||||| |  |||||||||||    
T  3532 ttaggagaaaaagaagaaaaagaaaacacaattcaacccccccttcttgtg 3582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 13254 - 13220
Alignment:
Q  21 taggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||| ||||||||||||||||||||||||    
T  13254 taggagaaaacgaagaaaaagctaacacaattcaa 13220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 2919 - 2953
Alignment:
Q  21 taggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||| ||||||||||||||||||||||||    
T  2919 taggagaaaacgaagaaaaagctaacacaattcaa 2953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1747 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1747
Description:

Target: scaffold1747; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 581 - 532
Alignment:
Q  21 taggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||| ||||||||||| |||||||||||| |  |||||||||||    
T  581 taggagaaaacgaagaaaaagcaaacacaattcaatccccccttcttgtg 532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1745 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1745
Description:

Target: scaffold1745; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 830 - 879
Alignment:
Q  21 taggagaaaaagaagaaaaagctaacacaattcaaacatcccttcttgtg 70  Q
    |||||||||| ||||||||||| |||||||||||| |  |||||||||||    
T  830 taggagaaaacgaagaaaaagcaaacacaattcaatccccccttcttgtg 879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 5394 - 5357
Alignment:
Q  20 ttaggagaaaaagaagaaaaagctaacacaattcaaac 57  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  5394 ttaggataaaaagaagaaaaagccaacacaattcaaac 5357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 17608 - 17557
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaa--agaagaaaaagctaacacaattc 53  Q
    |||||||||||| |||||||||||||||  |||||||||||| ||||||||||    
T  17608 gatcagtgtttt-cagcttaggagaaaagaagaagaaaaagccaacacaattc 17557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1359 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1359
Description:

Target: scaffold1359; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 40 - 91
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 55  Q
    ||||||||||||| || ||||||||||| ||||||||||  ||||||||||||    
T  40 gatcagtgttttt-agattaggagaaaacgaagaaaaagtaaacacaattcaa 91  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Complemental strand, 87149 - 87121
Alignment:
Q  27 aaaaagaagaaaaagctaacacaattcaa 55  Q
    |||||||||||||||||||||||||||||    
T  87149 aaaaagaagaaaaagctaacacaattcaa 87121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 7156 - 7113
Alignment:
Q  3 gatcagtgtttttcagcttaggagaaaaagaagaaaaagctaaca 47  Q
    |||||||||||| |||||||||||||||| ||||||||| |||||    
T  7156 gatcagtgtttt-cagcttaggagaaaaataagaaaaagttaaca 7113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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