View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12061_low_6 (Length: 386)
Name: NF12061_low_6
Description: NF12061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12061_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 384
Target Start/End: Original strand, 34511766 - 34512134
Alignment:
| Q |
16 |
agagtagcagcttgttctttgtgaattttgagttagtgtaatgacgctttgacaatttggaaagttgatgcagtgttggtttgattttgataagtttata |
115 |
Q |
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| T |
34511766 |
agagtagcagcttgttctttgtgaattttgagttagtgtaatgacgctttgacaatttggaaagttgatgcagcgttggtttgattttgataagtttata |
34511865 |
T |
|
| Q |
116 |
cgtggttttaaggtgatcgatgataaagttgaattcatttctgctattataattttgaacatctttgccttcatgttagtgttgccgattgcagattgcg |
215 |
Q |
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| T |
34511866 |
tgtggttttaaggcgatcgatgataaagttgaattcatttttgctcttataattttgaacatctttgccttcatgttagtgttgccgatcgcagattgcg |
34511965 |
T |
|
| Q |
216 |
gaaaatagttgtctacatcgatgctatatgacaatactttatgctaattgtgtttgcataataatagcattctgttaaaattccactatgctatgacgct |
315 |
Q |
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| T |
34511966 |
gaaaatagctgtctacatcgatgctatatgacaatactttatgctaattgtgtttgcataataatagcattctgttaaaattccactatgctatgatgct |
34512065 |
T |
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| Q |
316 |
atagcgtcactatagctgctatttgacaacattgcttcatgtttacgtgttcttgtacgaatgttttat |
384 |
Q |
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| T |
34512066 |
atagcgccactatagctgctatttgacaacactgcttcatgtttacgtgttcttgtacgaatgtattat |
34512134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 331
Target Start/End: Original strand, 17933100 - 17933153
Alignment:
| Q |
278 |
aatagcattctgttaaaattccactatgctatgacgctatagcgtcactatagc |
331 |
Q |
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| T |
17933100 |
aatagcaatctgttcaaattcccttatgctataaagctatagcgtcactatagc |
17933153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 347
Target Start/End: Original strand, 1318618 - 1318652
Alignment:
| Q |
313 |
gctatagcgtcactatagctgctatttgacaacat |
347 |
Q |
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| T |
1318618 |
gctatagcgtcactacagctgctatttgacaacat |
1318652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 8455139 - 8455083
Alignment:
| Q |
293 |
aaattccactatgctatgacgctatagcgtcactatagctgctatttgacaacattg |
349 |
Q |
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| T |
8455139 |
aaattccactacgctataacggtatagtgtcactatagctgctaagtaacaacattg |
8455083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 349
Target Start/End: Original strand, 33525049 - 33525105
Alignment:
| Q |
293 |
aaattccactatgctatgacgctatagcgtcactatagctgctatttgacaacattg |
349 |
Q |
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|||||||||||||||||| | |||||| || ||||||| |||||||||||||||| |
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|
| T |
33525049 |
aaattccactatgctatgtcactatagtatcgctatagcaactatttgacaacattg |
33525105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 348
Target Start/End: Original strand, 52444956 - 52445016
Alignment:
| Q |
288 |
tgttaaaattccactatgctatgacgctatagcgtcactatagctgctatttgacaacatt |
348 |
Q |
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||||||||||| |||||| ||| ||||||||| |||||||| |||||||||||||||| |
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|
| T |
52444956 |
tgttaaaattctgctatgcaatggtgctatagcgctactatagcagctatttgacaacatt |
52445016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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