View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12061_low_7 (Length: 378)
Name: NF12061_low_7
Description: NF12061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12061_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 5758278 - 5758638
Alignment:
| Q |
1 |
ataattcttctacaatataatcaacctaaggcatcatatgaaatactcacatgttagtaaaacatgacaaagattgtagaacaacatatatcaatgccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5758278 |
ataattcttctacaatataatcaacctaaggcatcatatgaaatactcacatgttagtaaaacatgacaaagattgtagaacaacatatatcaatgccat |
5758377 |
T |
|
| Q |
101 |
acattcaaacagttgtcaatagtagaagagtacttactttcaatgagtcgaaaccaaactttcaacgtgagagaacggacatgctttaccggaatatttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5758378 |
acattcaaacagttgtcaatagtagaagagtacttactttcaatgagtcgaaaccaaactttcaacgtgagagaacggacatgctttaccggaatatttt |
5758477 |
T |
|
| Q |
201 |
ctcactaatctactttcttcccgagtatacctcaatgctctaactgtccctactactctattttctctctgattatagataattgttttgcaaccatatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5758478 |
ctcactaatctactttcttcccgagtatacctcaatgctctaactgtccctactactctattttctctctgattatagataattgttttgcaaccatatt |
5758577 |
T |
|
| Q |
301 |
catatgtcaataccaaggtatctccattcttagaaaggtacagcggcaacaagaatagatt |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5758578 |
catatgtcaataccaaggtatctccattcttagaaaggtacagcggcaacaagaatagatt |
5758638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 10482489 - 10482457
Alignment:
| Q |
136 |
actttcaatgagtcgaaaccaaactttcaacgt |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
10482489 |
actttcaatgagtcgaaaccaaactttcaacgt |
10482457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 10468350 - 10468318
Alignment:
| Q |
136 |
actttcaatgagtcgaaaccaaactttcaacgt |
168 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
10468350 |
actttcaatgagtcaaaaccaaactttcaacgt |
10468318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 5979391 - 5979324
Alignment:
| Q |
98 |
catacattcaaacagttgtcaatagtagaagagtacttactttcaatgagtcgaaaccaaactttcaa |
165 |
Q |
| |
|
|||| ||||||||| ||| ||| |||||||| |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
5979391 |
catagattcaaacaattgaaaatgatagaagagaacttacttccaatgagtcgaaaccaagctttcaa |
5979324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University