View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12061_low_8 (Length: 244)
Name: NF12061_low_8
Description: NF12061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12061_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 98 - 235
Target Start/End: Complemental strand, 49484919 - 49484782
Alignment:
| Q |
98 |
ttgaatgatagtaaaactagtgatttaattatcttcaaatgctgccttattgaatccatgatagtcatttggttgaatctgtgatttttatttgattttc |
197 |
Q |
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| T |
49484919 |
ttgaatgatagtaaaactagtgatttaattatcttcaaatgctgccttattgaatccatgatagtcatttggttgaatctgtgatttttatttgattttc |
49484820 |
T |
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| Q |
198 |
gctgtgatatctctttcatccttattttctgatgtcca |
235 |
Q |
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| T |
49484819 |
tctgtgatatctcttttatccttattttctgatatcca |
49484782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 98 - 213
Target Start/End: Complemental strand, 49701422 - 49701307
Alignment:
| Q |
98 |
ttgaatgatagtaaaactagtgatttaattatcttcaaatgctgccttattgaatccatgatagtcatttggttgaatctgtgatttttatttgattttc |
197 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
49701422 |
ttgaatgatagtaaaactaatgatttaattatcttcaaatgctgccttattgaatccataatagtcatttggttgaatctgtgattttcatttgattttc |
49701323 |
T |
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| Q |
198 |
gctgtgatatctcttt |
213 |
Q |
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|||| |||||||||| |
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| T |
49701322 |
tctgtaatatctcttt |
49701307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 49485052 - 49484947
Alignment:
| Q |
1 |
tcacaagccaacagatgctagactatgtttgtcaactaatctaatactggtgttacactttaattggnnnnnnntgttttcgctaagccttgatttcttg |
100 |
Q |
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| T |
49485052 |
tcacaagccaacagatgctagactatgtttgtcaactaatctaatactggtgttacactttaattggaaaaaaatgttttcactaagccttgatttcttt |
49484953 |
T |
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| Q |
101 |
aatgat |
106 |
Q |
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|||||| |
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| T |
49484952 |
aatgat |
49484947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 49529214 - 49529118
Alignment:
| Q |
106 |
tagtaaaactagtgatttaattatcttcaaa-tgctgccttattga-----atccatgatagtcatttggttgaatctgtgatttttatttgatttt |
196 |
Q |
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||||||||| || ||||||||||||||||| ||||||| |||| | |||||| |||||||||||||||||| ||||||||| |||||||||| |
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| T |
49529214 |
tagtaaaaccagacatttaattatcttcaaaatgctgccatattcatcaaaatccataatagtcatttggttgaatttgtgattttcatttgatttt |
49529118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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