View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12062_high_14 (Length: 236)
Name: NF12062_high_14
Description: NF12062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12062_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 40 - 217
Target Start/End: Original strand, 4970123 - 4970300
Alignment:
| Q |
40 |
ccatagagaaaaagaacaaacaacctcataatgaagcagatggtcgaagagaggatcctctaagatcatccttaaaaaggcagcaatattagagaaacaa |
139 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4970123 |
ccatagagaaaaagaacaaacaacctcataatgaagcagatggtcgaagagaggatcctctaagatcatccttaaaaagacagcaatattagagaaacaa |
4970222 |
T |
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| Q |
140 |
acaaaccctcataaaaaatatttattataaaaatcacaaagatttaattaaattttgtttgtattcaacttttgctgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4970223 |
acaaaccctcataaaaaatatttattataaaaatcacaaagatttaattaaattttgtttgtattcaacttttgctgc |
4970300 |
T |
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Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 42 - 217
Target Start/End: Original strand, 28571037 - 28571213
Alignment:
| Q |
42 |
atagagaaaaagaacaaacaacctcataatgaagcagatggtcgaagagaggatcctctaagatcatccttaaaaa-ggcagcaatattagagaaacaaa |
140 |
Q |
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|||||||||| || |||||| |||||| |||||||||| | ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
28571037 |
atagagaaaacgagcaaacatcctcatgatgaagcagacgttcgaagagaggatcctctaagatcatccttaaaaaaggcatcaatattagagaaacaaa |
28571136 |
T |
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| Q |
141 |
caaaccctcataaaaaatatttattataaaaatcacaaagatttaattaaattttgtttgtattcaacttttgctgc |
217 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28571137 |
caaacccttctaaaaaatatttataataaaaatcacaaagatttaattaaattttgtttgtattcaacgtttgctgc |
28571213 |
T |
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