View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12062_high_15 (Length: 227)
Name: NF12062_high_15
Description: NF12062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12062_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 52152356 - 52152538
Alignment:
| Q |
1 |
caaattaggtagccaaaacaaaaacaaaatgttagacatcttcaaattttgtagct-aaaacataaaagattcgtcaaattattggtcgc----atatct |
95 |
Q |
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| T |
52152356 |
caaattaggtagccaaaacaaaaacaaaatgttagacatcttcacattttgtagctaaaaacataaaagattcgtca----attggtcgcatatatatct |
52152451 |
T |
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| Q |
96 |
ctcaacattccttcttgatgaaaacactagttaaaaccatctttgtctgcagagaagccttcagcatcttgataccctattagaaag |
182 |
Q |
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| T |
52152452 |
ctcaacattccttcttgatgaaaacactagttaaaaccatctttgtctgcagagaagccttcagcatcttgataccctattagaaag |
52152538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 52145009 - 52145079
Alignment:
| Q |
103 |
ttccttcttgatgaaaacactagttaaaaccatctttgtctgcagagaagccttcagcatcttgataccct |
173 |
Q |
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| T |
52145009 |
ttccttcttgaggaaaacacttgtcaataccattttggattgcagagaagcctttagcaacttgataccct |
52145079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 17016175 - 17016232
Alignment:
| Q |
104 |
tccttcttgatgaaaacactagttaaaaccatctttgtctgcagagaagccttcagca |
161 |
Q |
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| T |
17016175 |
tccttcttgatgaaaacactcgtcaataccatctttgattgcagagaagccttaagca |
17016232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 17546612 - 17546669
Alignment:
| Q |
104 |
tccttcttgatgaaaacactagttaaaaccatctttgtctgcagagaagccttcagca |
161 |
Q |
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| T |
17546612 |
tccttcttgatgaaaacactcgtcaataccatctttgattgcagagaagccttaagca |
17546669 |
T |
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