View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12062_high_6 (Length: 374)
Name: NF12062_high_6
Description: NF12062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12062_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 15 - 358
Target Start/End: Original strand, 32908694 - 32909036
Alignment:
| Q |
15 |
atgaaaatcaaagggattggattttaaaatttaatacaatagctcaacagttatggatcatattattggtgcacgagtcatatcatatcttcaaagatag |
114 |
Q |
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| T |
32908694 |
atgaaaatcaaagggattagattttaaaatttaatataatagctcaacagttatggatcatattattggtgcacgagtcatatcatatcttcaaagatag |
32908793 |
T |
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| Q |
115 |
tttatatatcttttaaaatgggacagcttgtgaagactttcttgatgcaagtaagatttcatttatgaaaatgatagatacaaatggaagattgatgaat |
214 |
Q |
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| T |
32908794 |
tttatatatcttttaaaatgggacagcttgtgaagactttcttgatgcaagtaagatttcatttatgaaaatgatggatacaaatggaagattgatgaat |
32908893 |
T |
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| Q |
215 |
cacggttattaaaatatttttgaaaaataatctggaaannnnnnnnatttgtgtctatctctcctgtaataattcattaatttctttttgagaaaaagat |
314 |
Q |
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| T |
32908894 |
cacggttattaaaatatttttgaaaaataatctgg-aattttttttatttgtgtctatctctcttataatgattcattaatttctttttgagaaaaagat |
32908992 |
T |
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| Q |
315 |
aaaatataaactctgaacttctaaatggatcattttattgttgt |
358 |
Q |
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| T |
32908993 |
aaaatataaactctgaacttctaaatggatcattttattgttgt |
32909036 |
T |
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