View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12062_high_7 (Length: 282)
Name: NF12062_high_7
Description: NF12062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12062_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 398528 - 398275
Alignment:
| Q |
19 |
cacagatcattaataactggggcctattttgattgttatatttatcatgt----tgatgaagatgcattat-----gtgacaagaggagagtggaccctc |
109 |
Q |
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| T |
398528 |
cacagatcattaataactggggcctgttttgattgttatatttatcatgtatgttgatgaagatgcattatattatgtgacaagaggagagtggaccctc |
398429 |
T |
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| Q |
110 |
cttcttttctatgaaacttataataata-----aataattactcaaaaacaatgcatgccaagtgccaacactatagtatttattcagtattcattcatc |
204 |
Q |
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| T |
398428 |
cttcttttctatgaaacttataataataataataataattactcaaaaacaatgcatgccaa-----cacactatagtatttattcagtattcattcatc |
398334 |
T |
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| Q |
205 |
atatcttacttttcaaaaccatagcacgtggatagctctaaagttatgacagtgcgggg |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
398333 |
atatcttacttttcaaaaccatagcacgtggatagctctaaagttatgacagtgcgggg |
398275 |
T |
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