View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12062_high_8 (Length: 262)
Name: NF12062_high_8
Description: NF12062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12062_high_8 |
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| [»] scaffold0083 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 11472788 - 11472556
Alignment:
| Q |
18 |
attgcaatccccccttataatttggactcaatatttttccattttcatcctttttaacattatacaagtcacacttacactcaatacaccccagtctatc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
11472788 |
attgcaatccccccttataatttggactcaatatttttccattttcatcctttgtaacattatacaaatcacacttacactcaatacaccccattctatc |
11472689 |
T |
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| Q |
118 |
ttccacacccctagtatcaatagcatgaacattaattaaccatttttccacgtacccttttggaatttcttcaggattaccaacttctatgccataaggg |
217 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11472688 |
ttccacacccctggtatcaatagcatgaacattaattaaccatttttccacgtacccttttggaatttcttcaggattaccaacttctatgccataaggg |
11472589 |
T |
|
| Q |
218 |
ttgggaatatatgcatgtgtgcctcttgtttca |
250 |
Q |
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| |||||||||| || |||||||||||||||| |
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| T |
11472588 |
tcaggaatatatgtatttgtgcctcttgtttca |
11472556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 11479180 - 11478948
Alignment:
| Q |
18 |
attgcaatccccccttataatttggactcaatatttttccattttcatcctttttaacattatacaagtcacacttacactcaatacaccccagtctatc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
11479180 |
attgcaatccccccttataatttggactcaatatttttccattttcatcctttgtaacattatacaaatcacacttacactcaatacaccccattctatc |
11479081 |
T |
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| Q |
118 |
ttccacacccctagtatcaatagcatgaacattaattaaccatttttccacgtacccttttggaatttcttcaggattaccaacttctatgccataaggg |
217 |
Q |
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| T |
11479080 |
ttctacacccctagtatcaatagcatgaacattaatcaaccatttttccacatacccttttggaatttcttcatgattaccaacttctattccataaggt |
11478981 |
T |
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| Q |
218 |
ttgggaatatatgcatgtgtgcctcttgtttca |
250 |
Q |
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| T |
11478980 |
tgaggaatatatgtatttgtgcctcttgtttca |
11478948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 11485449 - 11485219
Alignment:
| Q |
18 |
attgcaatccccccttataatttggactcaatatttttccattttcatcctttttaacattatacaagtcacacttacactcaatacaccccagtctatc |
117 |
Q |
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|||||||||| || ||||||||||||||||| || |||||||||||||||| ||||| |||||| ||||||||||||||| ||||||||| |||||| |
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| T |
11485449 |
attgcaatcctcctttataatttggactcaaagcttctccattttcatcctttgtaacaccatacaaatcacacttacactcagtacaccccattctatc |
11485350 |
T |
|
| Q |
118 |
ttccacacccctagtatcaatagcatgaacattaattaaccatttttccacgtacccttttggaatttcttcaggattaccaacttctatgccataaggg |
217 |
Q |
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||| ||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11485349 |
ttctacacc--tagtatcaatagcatgaacattaataaaccatttttccacatacccttttggaatttcttcaggattaccaacttctatgccataaggg |
11485252 |
T |
|
| Q |
218 |
ttgggaatatatgcatgtgtgcctcttgtttca |
250 |
Q |
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| T |
11485251 |
tcaggaatatatgtatttgtgcctcttgtttca |
11485219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 11462550 - 11462372
Alignment:
| Q |
72 |
taacattatacaagtcacacttacactcaatacaccccagtctatcttccacacccctagtatcaatagcatgaacattaattaaccatttttccacgta |
171 |
Q |
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|||||||||| | |||||| ||||||||||||||||||| | |||||||||||||||| |||||||| ||||| ||||| || | ||||||||| | || |
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| T |
11462550 |
taacattatataggtcacatttacactcaatacaccccattatatcttccacaccccttgtatcaattgcatggacattgatcatccatttttcatcata |
11462451 |
T |
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| Q |
172 |
cccttttggaatttcttcaggattaccaacttctatgccataagggttgggaatatatgcatgtgtgcctcttgtttca |
250 |
Q |
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| T |
11462450 |
ccctttaggaatttgtgaaggattaccaatttctactccataagggtcaggaatatatgtatctgtgcctctagtttca |
11462372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 47554 - 47322
Alignment:
| Q |
18 |
attgcaatccccccttataatttggactcaatatttttccattttcatcctttttaacattatacaagtcacacttacactcaatacaccccagtctatc |
117 |
Q |
| |
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||||||| ||||| ||||||||||||||||| | ||||||||||| || |||||||||| | |||||| | || |||||||| |||| ||||| |
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| T |
47554 |
attgcaaaccccctttataatttggactcaaagcatcaccattttcatctttagtaacattatataggtcacatctgcaatcaatacatcccatcctatc |
47455 |
T |
|
| Q |
118 |
ttccacacccctagtatcaatagcatgaacattaattaaccatttttccacgtacccttttggaatttcttcaggattaccaacttctatgccataaggg |
217 |
Q |
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|||||||||||| ||||||||| |||||| ||| || |||||||| || || || |||||||||||||| | ||||||||||||||||| ||||||||| |
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| T |
47454 |
ttccacaccccttgtatcaataacatgaatattcatcaaccatttctctacataaccttttggaatttcagctggattaccaacttctataccataaggg |
47355 |
T |
|
| Q |
218 |
ttgggaatatatgcatgtgtgcctcttgtttca |
250 |
Q |
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| |||||||||| || |||||||||||||||| |
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| T |
47354 |
tctggaatatatgtatttgtgcctcttgtttca |
47322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 21546885 - 21546654
Alignment:
| Q |
18 |
attgcaatccccccttataatttggactcaatatttttccattttcatcctttttaacattatacaagtcacacttacactcaatacaccccagtctatc |
117 |
Q |
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|
||||||| ||||| ||||||||||||||||| || ||||||||||| ||| | ||||| || | |||||| ||||||||||| |||| | || |
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| T |
21546885 |
attgcaaaccccctttataatttggactcaaagcattaccattttcatcttttgtgacattgtataggtcacatgagcactcaatacatcccacccggtc |
21546786 |
T |
|
| Q |
118 |
ttccacacccctagtatcaatagcatgaacattaattaaccatttttccacgtacccttttggaatttcttcaggattaccaacttctatgccataaggg |
217 |
Q |
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||||||||||| |||||||| ||||||||||| || |||||||| ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
21546785 |
atccacacccctcgtatcaattgcatgaacattgatcaaccatttctccacatacccttttggaatttcagcaggattaccaacttctataccataaggg |
21546686 |
T |
|
| Q |
218 |
ttgggaatatatgcatgtgtgcctcttgtttc |
249 |
Q |
| |
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| |||||||||| || ||||| ||||||||| |
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| T |
21546685 |
tctggaatatatgtatttgtgcttcttgtttc |
21546654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 38227202 - 38227269
Alignment:
| Q |
131 |
gtatcaatagcatgaacattaattaaccatttttccacgtacccttttggaatttcttcaggattacc |
198 |
Q |
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|||||||| ||||||||||||| |||||||| ||| | |||||| |||||| |||||||||||||| |
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| T |
38227202 |
gtatcaatggcatgaacattaagcaaccatttatcctcaaacccttgtggaatctcttcaggattacc |
38227269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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