View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12062_low_1 (Length: 794)

Name: NF12062_low_1
Description: NF12062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12062_low_1
NF12062_low_1
[»] chr6 (9 HSPs)
chr6 (119-639)||(15329739-15330259)
chr6 (135-639)||(15365906-15366411)
chr6 (1-103)||(15339416-15339517)
chr6 (1-117)||(33847153-33847269)
chr6 (1-87)||(33846139-33846225)
chr6 (731-794)||(15329585-15329648)
chr6 (731-794)||(15365752-15365815)
chr6 (143-260)||(34543-34660)
chr6 (143-244)||(8364699-8364800)
[»] chr8 (2 HSPs)
chr8 (1-105)||(24917427-24917531)
chr8 (1-72)||(1080886-1080957)
[»] chr3 (3 HSPs)
chr3 (1-110)||(53281537-53281647)
chr3 (143-228)||(36304125-36304210)
chr3 (146-243)||(45289132-45289229)
[»] chr7 (6 HSPs)
chr7 (1-87)||(12543351-12543437)
chr7 (1-70)||(7744523-7744592)
chr7 (143-247)||(45601616-45601720)
chr7 (143-247)||(28627971-28628075)
chr7 (144-247)||(1569156-1569259)
chr7 (143-260)||(22174127-22174244)
[»] chr5 (6 HSPs)
chr5 (1-85)||(11893733-11893817)
chr5 (1-85)||(28086249-28086333)
chr5 (143-247)||(6889133-6889237)
chr5 (143-260)||(9235176-9235291)
chr5 (145-247)||(14667911-14668013)
chr5 (146-247)||(6859521-6859622)
[»] chr2 (7 HSPs)
chr2 (1-85)||(562177-562261)
chr2 (143-247)||(33287561-33287665)
chr2 (143-260)||(33504350-33504468)
chr2 (143-260)||(18959038-18959155)
chr2 (143-228)||(19336931-19337016)
chr2 (143-244)||(26670911-26671012)
chr2 (142-187)||(31959721-31959766)
[»] chr1 (3 HSPs)
chr1 (1-85)||(10040324-10040409)
chr1 (143-244)||(8796352-8796453)
chr1 (145-215)||(6084147-6084217)
[»] chr4 (3 HSPs)
chr4 (143-247)||(37488231-37488335)
chr4 (143-258)||(51421859-51421974)
chr4 (193-246)||(40654215-40654268)


Alignment Details
Target: chr6 (Bit Score: 411; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 119 - 639
Target Start/End: Complemental strand, 15330259 - 15329739
Alignment:
Q  119 aaccacaacaaccacgtgacgtttgctacatggatcaaattattccatattgttctctcataacccataatttaatctaagtaattaatttctacatctt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||    
T  15330259 aaccacaacaaccacgtgacgtttgctacatggatcaaattattccatattgttctctcctaactcataatttgatctaagtaattaatttctacatctt 15330160  T
Q  219 tcttgatagtgtcttttatagtttttctaaattttcctctgcatatatttaaaattatatattnnnnnnncattgaaacatattgtatttgctagtgata 318  Q
    |  | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||| ||||||||| |||||||    
T  15330159 ttctaatagtgtgttttatagtttttctaaattttcctctgcatatatttaaaattatatattaaaaaaacattgaaacatagtgtatttgccagtgata 15330060  T
Q  319 cacatctcccttggttgttttcaggccatatgatgtaggcaataacattagaagagataatagaatcaaattcgagtaagaaggaccgtggagagatgag 418  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  15330059 cacatctcccttggttgttttcaggctatatgatgtaggcaataacattagaagagataatagaatcaaattcgagtaagaaggactgtggagagatgag 15329960  T
Q  419 taataataccttctggttttgtnnnnnnnggttcttgaacatatagtttaaatgatggttatattgactccaagagtaacttaaaagtgttattccaaaa 518  Q
    |||||||||||| |||||||||       |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||     
T  15329959 taataataccttttggttttgtaaaaaaaggttcttgaacatatagtttaaatgatggttatattgactccgagaataacttaaaagtgttattccaaat 15329860  T
Q  519 ctccatctttgattttacctatccatcacaatgctggttttccatccatcagtcgtagatatggttccggtgatggttactaaagatccatcagatccat 618  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15329859 ctccatctttgattttacctatccatcataatgttggttttccatccatcagtcgtagatatggttccggtgatggttactaaagatccatcagatccat 15329760  T
Q  619 ccatctattgtgccagaaggg 639  Q
    |||||||||||||||||||||    
T  15329759 ccatctattgtgccagaaggg 15329739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 135 - 639
Target Start/End: Complemental strand, 15366411 - 15365906
Alignment:
Q  135 tgacgtttgctacatggatcaaattattccatattgttctctcataacccataatttaatctaagtaattaatttctacatctttcttgatagtgtcttt 234  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||| || |||||||||  | |||||||||||    
T  15366411 tgacgtttgctacatggatcaaagtattccgtattgttctctcataacccataatttgatctaagtaattaacttttacatcttttataatagtgtcttt 15366312  T
Q  235 tatagtttttctaaattttcctctgcatatatttaaaattatatattnnnnnnncattgaaacatattgtatttgctagtgatacacatctccc-ttggt 333  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||| ||||||||||||||||| ||| |    
T  15366311 tatagtttttttaaattttcctctgcatatatttaaaattatatattaaaaaaacattgaaacatattgtatttgccagtgatacacatctccccttgat 15366212  T
Q  334 tgttttcaggccatatgatgtaggcaataacattagaagagataatagaatcaaattcgagtaagaaggaccgtggagagatgagtaataataccttctg 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| || |||  |||||||||||||||||||||||||||    
T  15366211 tgttttcaggccatatgatgtaggcaataacattagaagagataatagaatcaaattcaggtaaaaatgactatggagagatgagtaataataccttctg 15366112  T
Q  434 gttttgtnnnnnnnggttcttgaacatatagtttaaatgatggttatattgactccaagagtaacttaaaagtgttattccaaaactccatctttgattt 533  Q
    |||||||       |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||    
T  15366111 gttttgtaaaaaaaggttcttgaacatatagtttaaatgatggttatattgactccgagagtaacttaaaagtgttatttcaaatctccatctttgattt 15366012  T
Q  534 tacctatccatcacaatgctggttttccatccatcagtcgtagatatggttccggtgatggttactaaagatccatcagatccatccatctattgtgcca 633  Q
    ||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  15366011 tacctttccatcacaatgttggttttccatccatctgtcgtagatatggttccggtgatggttactatagatccatcagatccatccatctattgtgcta 15365912  T
Q  634 gaaggg 639  Q
    ||||||    
T  15365911 gaaggg 15365906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 15339517 - 15339416
Alignment:
Q  1 gagaagagggtgagaaagagaaagctgtgtgaaatttccaaaatacccatgccagataagaggtgtatatggagatgtacatgaaagtatgtctaccaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||| ||||||||||||||||| |||||||||||    
T  15339517 gagaagagggtgagaaagagaaagctgtgtgaaatttccaaaatacccatgccacataacgggtgtatat-gagatgtacatgaaagtgtgtctaccaat 15339419  T
Q  101 cat 103  Q
    |||    
T  15339418 cat 15339416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 33847153 - 33847269
Alignment:
Q  1 gagaagagggtgagaaagagaaagctgtgtgaaatttccaaaatacccatgccagataagaggtgtatatggagatgtacatgaaagtatgtctaccaat 100  Q
    |||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||| || ||||||||||||  |||  |  |||    
T  33847153 gagaagagggtgggaaagagaaagttgtgtgaaatttctaaaatacccatgccacataagaggtgtatatgaaggtgtacatgaaagggtgtgcatgaat 33847252  T
Q  101 catttcccatatttaaa 117  Q
    |||||||| ||||||||    
T  33847253 catttcccttatttaaa 33847269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 33846225 - 33846139
Alignment:
Q  1 gagaagagggtgagaaagagaaagctgtgtgaaatttccaaaatacccatgccagataagaggtgtatatggagatgtacatgaaag 87  Q
    |||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||| || ||||||||||||    
T  33846225 gagaagagggtgggaaagagaaagttgtgtgaaatttctaaaatacccatgccacataagaggtgtatatgaaggtgtacatgaaag 33846139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 731 - 794
Target Start/End: Complemental strand, 15329648 - 15329585
Alignment:
Q  731 ggttgtcatcatctttcctaggaataactctgaccaaggctgaataagtagagaagataagcat 794  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15329648 ggttgtcatcatctttcctaggaataactctgaccaaggctgaataagtagagaagttaagcat 15329585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 731 - 794
Target Start/End: Complemental strand, 15365815 - 15365752
Alignment:
Q  731 ggttgtcatcatctttcctaggaataactctgaccaaggctgaataagtagagaagataagcat 794  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||| |||||||| |||||||    
T  15365815 ggttgtcatcttctttcctaggaataactctgacgaaggctgaataaatagagaagttaagcat 15365752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 260
Target Start/End: Original strand, 34543 - 34660
Alignment:
Q  143 gctacatggatcaaattattccatattgttctctcataacccataatttaatctaagtaattaatttctacatctttcttgatagtgtcttttatagttt 242  Q
    ||||||||||||||||||  ||||| |||||| |||||| ||||| || |||| || | |||||| | || ||||||||| || || ||| |||||||||    
T  34543 gctacatggatcaaattacgccataatgttctatcataaaccatatttcaatccaactcattaatctttagatctttcttaatggtttctcttatagttt 34642  T
Q  243 ttctaaattttcctctgc 260  Q
    |||||  | |||||||||    
T  34643 ttctaggtcttcctctgc 34660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 244
Target Start/End: Complemental strand, 8364800 - 8364699
Alignment:
Q  143 gctacatggatcaaattattccatattgttctctcataacccataatttaatctaagtaattaatttctacatctttcttgatagtgtcttttatagttt 242  Q
    ||||||||||||||||||  ||||| |||||| |||||| ||||  || | || || | ||||||||||| ||||||||| ||||| ||| |||||||||    
T  8364800 gctacatggatcaaattacgccataatgttctatcataaaccatgtttcagtccaacttattaatttctaaatctttcttaatagtttctcttatagttt 8364701  T
Q  243 tt 244  Q
    ||    
T  8364700 tt 8364699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 2e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 24917531 - 24917427
Alignment:
Q  1 gagaagagggtgagaaagagaaagctgtgtgaaatttccaaaatacccatgccagataagaggtgtatatggagatgtacatgaaagtatgtctaccaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| |||||||||||    
T  24917531 gagaagagggtgagaaagagaaagctgtgtgaaatttccaaaatacccatgccacataaggggtgtatatggggatgtacatgaaagtgtgtctaccaat 24917432  T
Q  101 cattt 105  Q
    |||||    
T  24917431 cattt 24917427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 1080957 - 1080886
Alignment:
Q  1 gagaagagggtgagaaagagaaagctgtgtgaaatttccaaaatacccatgccagataagaggtgtatatgg 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  1080957 gagaagagggtgagaaagagaaagctgtgtgaaatttccaaaatacccatgccacataaggggtgtatatgg 1080886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 4e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 53281537 - 53281647
Alignment:
Q  1 gagaagagggtgagaaagagaaagctgtgtgaaatttccaaaatacccatgccagataa-gaggtgtatatggagatgtacatgaaagtatgtctaccaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||| | |||| |||||||| ||||||||||    
T  53281537 gagaagagggtgagaaagagaaagctgtgtgaaatttccaaaatacccatgccacataagggggtgtatatgggggtgtagatgaaagtgtgtctaccaa 53281636  T
Q  100 tcatttcccat 110  Q
    |||||| ||||    
T  53281637 tcattttccat 53281647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 36304210 - 36304125
Alignment:
Q  143 gctacatggatcaaattattccatattgttctctcataacccataatttaatctaagtaattaatttctacatctttcttgatagt 228  Q
    ||||||||||||||||||  ||||| ||| || |||||| ||||| ||| ||| || | |||||| |||| ||||||||| |||||    
T  36304210 gctacatggatcaaattacgccataatgtcctatcataaaccatattttgatccaactcattaatctctagatctttcttaatagt 36304125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 45289132 - 45289229
Alignment:
Q  146 acatggatcaaattattccatattgttctctcataacccataatttaatctaagtaattaatttctacatctttcttgatagtgtcttttatagtttt 243  Q
    |||||||||||||||| | ||| |||||| |||||| ||||| ||  ||| || | |||||| |||| ||||||| | ||||| ||| ||||||||||    
T  45289132 acatggatcaaattatgctataatgttctatcataaaccatatttggatccaactcattaatctctaaatctttcctaatagtttctcttatagtttt 45289229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 6e-27; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 12543351 - 12543437
Alignment:
Q  1 gagaagagggtgagaaagagaaagctgtgtgaaatttccaaaatacccatgccagataagaggtgtatatggagatgtacatgaaag 87  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| | ||||||||| | ||||||||||||    
T  12543351 gagaagagggtgagaaagagaaagctgtttgaaatttccaaaatacccatgccacataagggttgtatatgggggtgtacatgaaag 12543437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 7744592 - 7744523
Alignment:
Q  1 gagaagagggtgagaaagagaaagctgtgtgaaatttccaaaatacccatgccagataagaggtgtatat 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  7744592 gagaagagggtgagaaagagaaagctgtgtgaaatttccaaaatacccatgccacataaggggtgtatat 7744523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 45601720 - 45601616
Alignment:
Q  143 gctacatggatcaaattattccatattgttctctcataacccataatttaatctaagtaattaatttctacatctttcttgatagtgtcttttatagttt 242  Q
    ||||||||||||||||||  ||||| |||||| ||||||  |||| ||| ||| || | |||||| |||| ||||||||| || || ||| |||||||||    
T  45601720 gctacatggatcaaattacaccatagtgttctatcataaatcatattttgatccaactcattaatctctagatctttcttaatggtttctcttatagttt 45601621  T
Q  243 ttcta 247  Q
    |||||    
T  45601620 ttcta 45601616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 247
Target Start/End: Original strand, 28627971 - 28628075
Alignment:
Q  143 gctacatggatcaaattattccatattgttctctcataacccataatttaatctaagtaattaatttctacatctttcttgatagtgtcttttatagttt 242  Q
    ||||||||||||||||||  ||||| |||||| |||||| ||| | ||  ||| || | |||||| |||| ||||||| | ||||| ||| |||||||||    
T  28627971 gctacatggatcaaattacgccataatgttctatcataaaccacatttgcatccaactcattaatctctaaatctttcctaatagtttctcttatagttt 28628070  T
Q  243 ttcta 247  Q
    |||||    
T  28628071 ttcta 28628075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 247
Target Start/End: Complemental strand, 1569259 - 1569156
Alignment:
Q  144 ctacatggatcaaattattccatattgttctctcataacccataatttaatctaagtaattaatttctacatctttcttgatagtgtcttttatagtttt 243  Q
    |||||| ||||||||||  || || |||||| |||||| ||||| ||| ||| || | |||||| |||| ||||||||| |||||  || ||||||||||    
T  1569259 ctacatcgatcaaattacgccgtaatgttctatcataaaccatattttgatccaactcattaatctctagatctttcttaatagttactcttatagtttt 1569160  T
Q  244 tcta 247  Q
    ||||    
T  1569159 tcta 1569156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 260
Target Start/End: Complemental strand, 22174244 - 22174127
Alignment:
Q  143 gctacatggatcaaattattccatattgttctctcataacccataatttaatctaagtaattaatttctacatctttcttgatagtgtcttttatagttt 242  Q
    |||||||||||||||  |  ||||| |||||| ||| |  ||||| ||  |||||| | |||||| |||| |||||| || ||||| ||| |||||||||    
T  22174244 gctacatggatcaaacaacgccataatgttctatcacataccatatttctatctaattcattaatctctagatctttgtttatagtttctcttatagttt 22174145  T
Q  243 ttctaaattttcctctgc 260  Q
    |||||  |||||||||||    
T  22174144 ttctacgttttcctctgc 22174127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 11893817 - 11893733
Alignment:
Q  1 gagaagagggtgagaaagagaaagctgtgtgaaatttccaaaatacccatgccagataagaggtgtatatggagatgtacatgaa 85  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||  | ||||||||||    
T  11893817 gagaagagggtgggaaagagaaagttgtgtgaaatttccaaaatacccatgccacataaggggtgtatatgagggtgtacatgaa 11893733  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 28086249 - 28086333
Alignment:
Q  1 gagaagagggtgagaaagagaaagctgtgtgaaatttccaaaatacccatgccagataagaggtgtatatggagatgtacatgaa 85  Q
    |||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| ||||| |||||||||| || ||||||||||    
T  28086249 gagaagagggtgggaaagagaaagttgtgtgaaatttctaaaatacccatgccacataaggggtgtatatgaaggtgtacatgaa 28086333  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 6889237 - 6889133
Alignment:
Q  143 gctacatggatcaaattattccatattgttctctcataacccataatttaatctaagtaattaatttctacatctttcttgatagtgtcttttatagttt 242  Q
    ||||||||||| ||||||  ||||| |||||| |||||| ||||| |||   | || |||||||| |||| ||||||| | ||||| ||| |||||||||    
T  6889237 gctacatggattaaattacgccataatgttctatcataaaccatattttggcccaactaattaatctctaaatctttcctaatagtttctcttatagttt 6889138  T
Q  243 ttcta 247  Q
    |||||    
T  6889137 ttcta 6889133  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 260
Target Start/End: Complemental strand, 9235291 - 9235176
Alignment:
Q  143 gctacatggatcaaattattccatattgttctctcataacccataatttaatctaagtaattaatttctacatctttcttgatagtgtcttttatagttt 242  Q
    ||||||||||||||||||| ||||| |||||| |||||| ||||| ||  ||| |  | |||||| |||| ||||||||| ||||| ||| |  ||||||    
T  9235291 gctacatggatcaaattatgccataatgttctatcataaaccatatttcgatccagctcattaatctctatatctttcttaatagtttctct--tagttt 9235194  T
Q  243 ttctaaattttcctctgc 260  Q
    |||||  | |||||||||    
T  9235193 ttctaggtcttcctctgc 9235176  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 247
Target Start/End: Complemental strand, 14668013 - 14667911
Alignment:
Q  145 tacatggatcaaattattccatattgttctctcataacccataatttaatctaagtaattaatttctacatctttcttgatagtgtcttttatagttttt 244  Q
    ||||||||||||||||  ||||| |||||| |||||| ||||| ||  ||| || | |||||| |||| |||||||||  |||  ||| |||||||||||    
T  14668013 tacatggatcaaattacaccataatgttctatcataaaccatacttggatccaactcattaatctctagatctttcttagtagcttctcttatagttttt 14667914  T
Q  245 cta 247  Q
    |||    
T  14667913 cta 14667911  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 6859622 - 6859521
Alignment:
Q  146 acatggatcaaattattccatattgttctctcataacccataatttaatctaagtaattaatttctacatctttcttgatagtgtcttttatagtttttc 245  Q
    |||||||| ||||||| ||||| |||||| |||||| ||||| |||   | |||||| |||| | || ||||||| | ||||| ||| ||||||||||||    
T  6859622 acatggataaaattatgccataatgttctatcataaaccatattttggcccaagtaactaatctgtaaatctttcctaatagtttctcttatagtttttc 6859523  T
Q  246 ta 247  Q
    ||    
T  6859522 ta 6859521  T

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Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 562261 - 562177
Alignment:
Q  1 gagaagagggtgagaaagagaaagctgtgtgaaatttccaaaatacccatgccagataagaggtgtatatggagatgtacatgaa 85  Q
    |||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| ||||| |||||||||| || ||||||||||    
T  562261 gagaagagggtgggaaagagaaagttgtgtgaaatttctaaaatacccatgccacataaggggtgtatatgaaggtgtacatgaa 562177  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 33287665 - 33287561
Alignment:
Q  143 gctacatggatcaaattattccatattgttctctcataacccataatttaatctaagtaattaatttctacatctttcttgatagtgtcttttatagttt 242  Q
    |||||| |||||||| |||  |||| |||||| |||||| ||||| ||  |||||| | ||||||||||| ||||||||| ||||| ||| |||||||||    
T  33287665 gctacaaggatcaaactatgtcataatgttctatcataaaccatatttcgatctaactcattaatttctagatctttcttaatagtttctcttatagttt 33287566  T
Q  243 ttcta 247  Q
    |||||    
T  33287565 ttcta 33287561  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 260
Target Start/End: Complemental strand, 33504468 - 33504350
Alignment:
Q  143 gctacatggatcaaattattccatattgttctctcataacccataatttaatctaagtaattaatt-tctacatctttcttgatagtgtcttttatagtt 241  Q
    |||| |||||||||||||  ||||| |||||| |||||  ||||| || |||| || | ||||| | |||| ||||||||| ||||| ||| ||||||||    
T  33504468 gctagatggatcaaattacgccataatgttctatcatataccatatttcaatccaacttattaaatctctagatctttcttaatagtttctcttatagtt 33504369  T
Q  242 tttctaaattttcctctgc 260  Q
    ||||||  |||| ||||||    
T  33504368 tttctaggtttttctctgc 33504350  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 260
Target Start/End: Complemental strand, 18959155 - 18959038
Alignment:
Q  143 gctacatggatcaaattattccatattgttctctcataacccataatttaatctaagtaattaatttctacatctttcttgatagtgtcttttatagttt 242  Q
    ||||||||||||||||||| ||||| |||||| |||||  ||||| ||| ||| || | |||||| || |  |||||| | ||||| ||| || ||||||    
T  18959155 gctacatggatcaaattatgccataatgttctatcatagaccatattttgatccaactcattaatctccaagtctttccttatagtttctcttgtagttt 18959056  T
Q  243 ttctaaattttcctctgc 260  Q
    |||||  | |||||||||    
T  18959055 ttctaggtcttcctctgc 18959038  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 19336931 - 19337016
Alignment:
Q  143 gctacatggatcaaattattccatattgttctctcataacccataatttaatctaagtaattaatttctacatctttcttgatagt 228  Q
    ||||||||||||||||||  ||||| |||||| |||||| ||||| ||  ||| || | |||||| |||| ||||||||| |||||    
T  19336931 gctacatggatcaaattacgccataatgttctatcataaaccatatttcgatccaactcattaatctctaaatctttctttatagt 19337016  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 244
Target Start/End: Complemental strand, 26671012 - 26670911
Alignment:
Q  143 gctacatggatcaaattattccatattgttctctcataacccataatttaatctaagtaattaatttctacatctttcttgatagtgtcttttatagttt 242  Q
    ||||||||||||||||||  ||||  | |||| ||||||  |||| |||  || || | |||||| |||| ||||||||| ||||| |||||||||||||    
T  26671012 gctacatggatcaaattacaccattatattctatcataaatcatattttggtccaactcattaatctctaaatctttcttaatagtttcttttatagttt 26670913  T
Q  243 tt 244  Q
    ||    
T  26670912 tt 26670911  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 31959766 - 31959721
Alignment:
Q  142 tgctacatggatcaaattattccatattgttctctcataacccata 187  Q
    |||||||||||||||||||| ||||| |||||| |||||| |||||    
T  31959766 tgctacatggatcaaattatgccatagtgttctatcataaaccata 31959721  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 10040324 - 10040409
Alignment:
Q  1 gagaagagggtgagaaagagaaagctgtgtgaaatttccaaaatacccatgccagataa-gaggtgtatatggagatgtacatgaa 85  Q
    |||||||||||| ||||||||||| ||||||||||||| ||||||| |||| || |||| | |||||||||| || ||||||||||    
T  10040324 gagaagagggtgggaaagagaaagttgtgtgaaatttctaaaatactcatgtcatataagggggtgtatatgaaggtgtacatgaa 10040409  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 244
Target Start/End: Complemental strand, 8796453 - 8796352
Alignment:
Q  143 gctacatggatcaaattattccatattgttctctcataacccataatttaatctaagtaattaatttctacatctttcttgatagtgtcttttatagttt 242  Q
    ||||||||||| ||||||  ||||| |||||| |||||| ||||| || |||| |||| |||||| |||| ||||||||| ||||| ||| ||| |||||    
T  8796453 gctacatggattaaattacgccataatgttctatcataaaccatatttcaatccaagtcattaatatctagatctttcttaatagtttctcttaaagttt 8796354  T
Q  243 tt 244  Q
    ||    
T  8796353 tt 8796352  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 6084217 - 6084147
Alignment:
Q  145 tacatggatcaaattattccatattgttctctcataacccataatttaatctaagtaattaatttctacat 215  Q
    ||||||||||||||||  |||||||||||| |||||| ||||| ||| ||| || | |||||| |||||||    
T  6084217 tacatggatcaaattacgccatattgttctatcataaaccatattttgatccaactcattaatctctacat 6084147  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 37488335 - 37488231
Alignment:
Q  143 gctacatggatcaaattattccatattgttctctcataacccataatttaatctaagtaattaatttctacatctttcttgatagtgtcttttatagttt 242  Q
    ||||||||||||||||||  ||||| || ||| |||| | ||||| ||| ||| || | ||||||||||| ||||||||| ||||| ||| |||||||||    
T  37488335 gctacatggatcaaattacgccataatgctctatcattaaccatattttgatcaaacttattaatttctagatctttcttaatagtttctcttatagttt 37488236  T
Q  243 ttcta 247  Q
    |||||    
T  37488235 ttcta 37488231  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 258
Target Start/End: Complemental strand, 51421974 - 51421859
Alignment:
Q  143 gctacatggatcaaattattccatattgttctctcataacccataatttaatctaagtaattaatttctacatctttcttgatagtgtcttttatagttt 242  Q
    ||||||||||||||||||   |||| |||||| |||||| ||||  ||  ||| || | |||||  |||| ||||||| | ||||| ||| |||||||||    
T  51421974 gctacatggatcaaattacgtcataatgttctatcataaaccatttttggatccaattcattaacctctaaatctttcctaatagtttctcttatagttt 51421875  T
Q  243 ttctaaattttcctct 258  Q
    |||||||| |||||||    
T  51421874 ttctaaatcttcctct 51421859  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 40654215 - 40654268
Alignment:
Q  193 atctaagtaattaatttctacatctttcttgatagtgtcttttatagtttttct 246  Q
    |||||| | |||||| | |||||||||||||||||| ||||||||| |||||||    
T  40654215 atctaactcattaatctttacatctttcttgatagtttcttttataatttttct 40654268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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