View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12062_low_10 (Length: 248)
Name: NF12062_low_10
Description: NF12062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12062_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 40 - 180
Target Start/End: Complemental strand, 4970456 - 4970316
Alignment:
| Q |
40 |
tgcattgatataggaattaattaattaccgcgtggaaaggtaaaaagggtgcaagaatgaagaatgtataaggaaggaacttaattcaatatggtggtgt |
139 |
Q |
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| T |
4970456 |
tgcattgatataggaattaattaattaccgcgtggaaaggtaaaaagggtgcaagaatgaagaatgtataaggaaggaacttaattcaatatggtggtgt |
4970357 |
T |
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| Q |
140 |
aatggggtggatgcaaggtggtgacaacttggaacaaggac |
180 |
Q |
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| T |
4970356 |
aatggggtggatgcaaggtggtgacaacttggaacaaggac |
4970316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 40 - 178
Target Start/End: Complemental strand, 4988365 - 4988227
Alignment:
| Q |
40 |
tgcattgatataggaattaattaattaccgcgtggaaaggtaaaaagggtgcaagaatgaagaatgtataaggaaggaacttaattcaatatggtggtgt |
139 |
Q |
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| T |
4988365 |
tgcattgatataggaattaattaattaccgcgtggaaaggtaaaaagggtgcaagaatgaagaatgtataaggaaggaacttaattcaatatggtggtgt |
4988266 |
T |
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| Q |
140 |
aatggggtggatgcaaggtggtgacaacttggaacaagg |
178 |
Q |
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| T |
4988265 |
aatggggtggatgcaaggtggtgacaacttggaacaagg |
4988227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 28571327 - 28571255
Alignment:
| Q |
41 |
gcattgatataggaattaattaattaccgcgtggaaaggtaaaaagggtgcaagaatgaagaatgtataagga |
113 |
Q |
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| T |
28571327 |
gcattgatataggaatttattaattacggcgtagaaagggaaaaagggtgcaaaaatgaagaatgtgtaagga |
28571255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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