View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12062_low_12 (Length: 240)
Name: NF12062_low_12
Description: NF12062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12062_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 34 - 196
Target Start/End: Original strand, 7788805 - 7788964
Alignment:
| Q |
34 |
gacaacaacaaacatttagaactcaatacaatcacacattcataaataagagtgaatcatatnnnnnnnnttcgaagggccaagggagagtttgtttcat |
133 |
Q |
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| T |
7788805 |
gacaacaacaaacatttagaactcaatacaatcacacattcataaataagagtgaatcatat-aaaaaaattcttagggccaagggagagtttgtttcat |
7788903 |
T |
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| Q |
134 |
ggatgaaaaaattattctgaggattaactttctcaggaaacaagaatgagatcttaatcctgg |
196 |
Q |
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| T |
7788904 |
ggatgaaaaaa-aattatga-gattaattttctcatgaaataagaatgagatcttaatcctgg |
7788964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 7768498 - 7768562
Alignment:
| Q |
140 |
aaaaattattctgaggattaactttctcaggaaacaagaatgagatcttaatcctgggtaatttt |
204 |
Q |
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| T |
7768498 |
aaaaattattctcagcattaactttctcatgaaataaaaatgagatcttaatcctgggtaatttt |
7768562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 7793669 - 7793730
Alignment:
| Q |
16 |
aaaacaatttcaagcggtgacaacaacaaacatttagaactcaatacaatcacacattcata |
77 |
Q |
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| T |
7793669 |
aaaacaatttcaagcagtgacaacaacatgcatttagaattcaatccagttacacatgcata |
7793730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 7816830 - 7816874
Alignment:
| Q |
16 |
aaaacaatttcaagcggtgacaacaacaaacatttagaactcaat |
60 |
Q |
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| T |
7816830 |
aaaacaatttcaagcagtgacaacaacatgcatttagaattcaat |
7816874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 48871555 - 48871480
Alignment:
| Q |
16 |
aaaacaatttcaagcggtgacaacaacaaacatttagaactcaatacaatcacacattcataaataagagtgaatca |
92 |
Q |
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| T |
48871555 |
aaaacaatttcaagcagtgaccaaaacataca-ttagagctcaatccaattacacattcacaaataacattgaatca |
48871480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 48876859 - 48876784
Alignment:
| Q |
16 |
aaaacaatttcaagcggtgacaacaacaaacatttagaactcaatacaatcacacattcataaataagagtgaatca |
92 |
Q |
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| T |
48876859 |
aaaacaatttcaagcagtgaccaaaacataca-ttagagctcaatccaattacacattcacaaataacattgaatca |
48876784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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