View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12062_low_3 (Length: 520)
Name: NF12062_low_3
Description: NF12062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12062_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 195 - 507
Target Start/End: Complemental strand, 43000788 - 43000471
Alignment:
| Q |
195 |
atgctcgtatgttttgtttagttgtttatctattccattttcatcgaattattatatctttcgggatttta-----atcactagtttttatctagttctg |
289 |
Q |
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| T |
43000788 |
atgctcgtatgttttgtttagttgtttatctattccattttcatcgaattattatatctttcgggatttcatttcaatcactagtttttatctagttctg |
43000689 |
T |
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| Q |
290 |
ttttttgctcttgcttccattgtcttctcattttcattttgatgccatagttgaaaaatttgttcagatagattgaatcattcagatattaatttaggca |
389 |
Q |
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| T |
43000688 |
ttttttgctcttccttccattgtcttctcatttgcattttgatgccatagttgaaaattttgttcagatagattgaatcattcagatattaatttaggca |
43000589 |
T |
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| Q |
390 |
caaagctatggctgaggaacccagacaaactcttggggattactggaagcctcgcagaatacaaagctgcattgtcctccctcctgttgatgcggatgtt |
489 |
Q |
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| T |
43000588 |
caaagctatggctgaggaacccagacaaactcttggggattactggaagcctcgcagaatacaaagctgcattgtcctccctcctgttgatgcggatgtt |
43000489 |
T |
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| Q |
490 |
agttacgacctctcatct |
507 |
Q |
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| T |
43000488 |
agttacgacctctcatct |
43000471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 43001085 - 43000907
Alignment:
| Q |
18 |
gaatgttgattcgtagtagtagtagtataaatgtgggtgaataatgatcaataaggaaatacataattagctatggagaatttcgggtaacaacttaatt |
117 |
Q |
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| T |
43001085 |
gaatgttgattcgtagtagtagtggtataaatgtgggtgaataatgatcaataaggaaatacataattagctatggagaatttcggttaacaacttaatt |
43000986 |
T |
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| Q |
118 |
ccatacaagtgagggataggttcttggtttaccataattaagtgaatttcttatttgctttgtggattctttgtcctat |
196 |
Q |
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| T |
43000985 |
ccatacaagtgagggataggttcttggtttaccataattaagtgaatttcttatttgctttgtggattctttatcctat |
43000907 |
T |
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