View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12062_low_4 (Length: 517)

Name: NF12062_low_4
Description: NF12062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12062_low_4
NF12062_low_4
[»] chr6 (4 HSPs)
chr6 (19-200)||(7639418-7639599)
chr6 (317-502)||(7639716-7639901)
chr6 (449-493)||(30384124-30384168)
chr6 (363-432)||(30385341-30385408)
[»] chr2 (1 HSPs)
chr2 (317-499)||(25280112-25280294)
[»] chr7 (3 HSPs)
chr7 (360-502)||(2829505-2829647)
chr7 (363-502)||(304470-304609)
chr7 (360-493)||(7527625-7527761)
[»] chr4 (4 HSPs)
chr4 (363-502)||(13769812-13769951)
chr4 (360-499)||(32823648-32823787)
chr4 (360-502)||(31940289-31940431)
chr4 (360-494)||(24783452-24783586)
[»] chr5 (1 HSPs)
chr5 (365-502)||(17172173-17172310)


Alignment Details
Target: chr6 (Bit Score: 163; Significance: 8e-87; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 7639418 - 7639599
Alignment:
Q  19 gtacaatatcattttaagatttatataagatgacataccgtaaataaacttagctcttttaatttgtcgatcaatgacttataagtatttgctaggatgg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7639418 gtacaatatcattttaagatttatataagatgacataccgtaaataaacttagctcttttaatttgtcaatcaatgacttataagtatttgctaggatgg 7639517  T
Q  119 agtactacttttatttgtattgatggcaggggcggatgctttcacaagggagg-gtacccaatggctaccccaaaataaaata 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7639518 agtactacttttatttgtattgatggca-gggcggatgctttcacaagggaggagtacccaatggctaccccaaaataaaata 7639599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 317 - 502
Target Start/End: Original strand, 7639716 - 7639901
Alignment:
Q  317 tcgaacttcgaattatttgatcctatcgtataggaacttcaaattacattaattgtatttgtaggttagcagagactttctattcttacgatttcactga 416  Q
    |||| ||||||||||||||| ||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7639716 tcgatcttcgaattatttgaccctattgtataggaacttcgaattacattaattatatttgtaggttagcagagactttctattcttacgatttcactga 7639815  T
Q  417 gcaagaaagaattcatttgaggttgcaattaagtcattacattgatgatatacctcagtcttttcaaaatataacaacgctctctg 502  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7639816 gcaagaaagaattcatttgaggttgcaattaagtcattacattcatgatatacctcagtcttttcaaaatataacaacgctctctg 7639901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 493
Target Start/End: Complemental strand, 30384168 - 30384124
Alignment:
Q  449 gtcattacattgatgatatacctcagtcttttcaaaatataacaa 493  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||    
T  30384168 gtcattacattgttgatatacctcagacttttcaaaatataacaa 30384124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 432
Target Start/End: Complemental strand, 30385408 - 30385341
Alignment:
Q  363 cattaattgtatttgtaggttagcagagactttctattcttacgatttcactgagcaagaaagaattcat 432  Q
    |||||||| ||||| |||||||||| |||||| |||||  |  ||||||||||||||||||||| |||||    
T  30385408 cattaattatatttataggttagcaaagacttactattaat--gatttcactgagcaagaaagacttcat 30385341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 317 - 499
Target Start/End: Original strand, 25280112 - 25280294
Alignment:
Q  317 tcgaacttcgaattatttgatcctatcgtataggaacttcaaattacattaattgtatttgtaggttagcagagactttctattcttacgatttcactga 416  Q
    |||||||||||||||||||||||  || |||||||||||| ||||||||||||| | ||||||||||||||||||| ||||||||||| ||||| |||||    
T  25280112 tcgaacttcgaattatttgatcccgtcatataggaacttcgaattacattaattatgtttgtaggttagcagagacgttctattcttatgattttactga 25280211  T
Q  417 gcaagaaagaattcatttgaggttgcaattaagtcattacattgatgatatacctcagtcttttcaaaatataacaacgctct 499  Q
    ||||||||||  |||||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||| ||||||| ||||    
T  25280212 gcaagaaagagctcatttgaggttgcaagtaagtcattacattgctaatatatctcagtcttttcaaaatttaacaacactct 25280294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 5e-51; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 360 - 502
Target Start/End: Original strand, 2829505 - 2829647
Alignment:
Q  360 ttacattaattgtatttgtaggttagcagagactttctattcttacgatttcactgagcaagaaagaattcatttgaggttgcaattaagtcattacatt 459  Q
    ||||||||||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||||||| ||||| | | ||||||||||||||||||||||    
T  2829505 ttacattaattatatttgtaggttagcagagacttactattctaatgatttcactgagcaagaaagacttcatcttaagttgcaattaagtcattacatt 2829604  T
Q  460 gatgatatacctcagtcttttcaaaatataacaacgctctctg 502  Q
    | ||||||||||||||||||||||||||||||||| |||||||    
T  2829605 gttgatatacctcagtcttttcaaaatataacaacactctctg 2829647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 363 - 502
Target Start/End: Complemental strand, 304609 - 304470
Alignment:
Q  363 cattaattgtatttgtaggttagcagagactttctattcttacgatttcactgagcaagaaagaattcatttgaggttgcaattaagtcattacattgat 462  Q
    |||||||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||||||| ||||| | | ||||||||||||||||||||||| |    
T  304609 cattaattatatttgtaggttagcagagacttactattctaatgatttcactgagcaagaaagacttcatcttatgttgcaattaagtcattacattgtt 304510  T
Q  463 gatatacctcagtcttttcaaaatataacaacgctctctg 502  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  304509 gatatacctcagtcttttcaaaatataacaacactctctg 304470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 360 - 493
Target Start/End: Original strand, 7527625 - 7527761
Alignment:
Q  360 ttacattaattgtatttgtaggttagcagagactttctattcttacgatttcactgagcaagaaagaattcatttgaggttgcaattaagtc---attac 456  Q
    ||||||||||| |||||||||||||  ||||| || ||||||| | ||||| | ||||||||||||| |||| |||||||||||||||||||   |||||    
T  7527625 ttacattaattatatttgtaggttataagagatttactattctaatgattttattgagcaagaaagatttcaattgaggttgcaattaagtcattattac 7527724  T
Q  457 attgatgatatacctcagtcttttcaaaatataacaa 493  Q
    | || ||| ||| || |||||||||||||||||||||    
T  7527725 aatggtgacataacttagtcttttcaaaatataacaa 7527761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 363 - 502
Target Start/End: Original strand, 13769812 - 13769951
Alignment:
Q  363 cattaattgtatttgtaggttagcagagactttctattcttacgatttcactgagcaagaaagaattcatttgaggttgcaattaagtcattacattgat 462  Q
    |||||||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||||||| ||||| | || |||||||||||||||||||||| |    
T  13769812 cattaattatatttgtaggttagcagagacttactattctaatgatttcactgagcaagaaagacttcatcttagattgcaattaagtcattacattgtt 13769911  T
Q  463 gatatacctcagtcttttcaaaatataacaacgctctctg 502  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  13769912 gatatacctcagtcttttcaaaatataacaacactctctg 13769951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 360 - 499
Target Start/End: Complemental strand, 32823787 - 32823648
Alignment:
Q  360 ttacattaattgtatttgtaggttagcagagactttctattcttacgatttcactgagcaagaaagaattcatttgaggttgcaattaagtcattacatt 459  Q
    ||||||||||| ||||||||| |||||| ||| || ||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32823787 ttacattaattatatttgtagattagcatagatttactattctaatgatttcactgagcaagaaagaattcatttgaagttgcaattaagtcattacatt 32823688  T
Q  460 gatgatatacctcagtcttttcaaaatataacaacgctct 499  Q
    | ||||||||||||||||||| ||||||||||||| ||||    
T  32823687 gctgatatacctcagtctttttaaaatataacaacactct 32823648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 360 - 502
Target Start/End: Complemental strand, 31940431 - 31940289
Alignment:
Q  360 ttacattaattgtatttgtaggttagcagagactttctattcttacgatttcactgagcaagaaagaattcatttgaggttgcaattaagtcattacatt 459  Q
    |||| |||||| ||||||||||||||| || | || ||||||| | ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  31940431 ttacgttaattatatttgtaggttagccgatagttactattctaatgatttcattgaacaagaaagaattcatttgaggttgcaattaagtcattacatt 31940332  T
Q  460 gatgatatacctcagtcttttcaaaatataacaacgctctctg 502  Q
    | |||||||||| |||||||||||||||||||||| |||||||    
T  31940331 gctgatataccttagtcttttcaaaatataacaacactctctg 31940289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 360 - 494
Target Start/End: Complemental strand, 24783586 - 24783452
Alignment:
Q  360 ttacattaattgtatttgtaggttagcagagactttctattcttacgatttcactgagcaagaaagaattcatttgaggttgcaattaagtcattacatt 459  Q
    ||||||| ||| || |||||||||||||||||||||||||| ||| | ||||||| | ||||||  |||||||  ||||||||||||||| |||| ||||    
T  24783586 ttacattgattatagttgtaggttagcagagactttctatttttatggtttcactaatcaagaacaaattcatccgaggttgcaattaagacattgcatt 24783487  T
Q  460 gatgatatacctcagtcttttcaaaatataacaac 494  Q
    | ||||||   ||||||||||||||||||||||||    
T  24783486 gctgatatgtgtcagtcttttcaaaatataacaac 24783452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 365 - 502
Target Start/End: Original strand, 17172173 - 17172310
Alignment:
Q  365 ttaattgtatttgtaggttagcagagactttctattcttacgatttcactgagcaagaaagaattcatttgaggttgcaattaagtcattacattgatga 464  Q
    |||||| ||||||||||||| |||||||||| |||||||| |||||| |||||||| ||||||||||||| ||||||||||||||||||||||||| |||    
T  17172173 ttaattatatttgtaggttaccagagactttttattcttatgatttccctgagcaataaagaattcatttaaggttgcaattaagtcattacattgttga 17172272  T
Q  465 tatacctcagtcttttcaaaatataacaacgctctctg 502  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  17172273 tataccttagtcttttcaaaatataacaacactctctg 17172310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University