View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12062_low_5 (Length: 434)
Name: NF12062_low_5
Description: NF12062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12062_low_5 |
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| [»] scaffold0576 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 15365756 - 15365336
Alignment:
| Q |
1 |
agcatctttcttataggcaagatgataataatataactttttctagtattattccccc-tctatcccaaaacaaaagataaagttgtgtttctcaaagat |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15365756 |
agcatctttcttataggcaagatgataataatataactttttctagtagtattcccccctctatcccaaaacaaaagataaagttgtgtttctcaaagat |
15365657 |
T |
|
| Q |
100 |
gtttcatcctttccctttcctagaaaagatgaagcttctatgaaaaatgcaactttatctttgcttttgggagaaatggagaattctattaggaaaagtt |
199 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
15365656 |
gtttcatcctttccctttcctaaaaaagatgaagcatctatgaaaaatgtaactttatctttgcttttgggagaaatggggaattctattaggaaaagtt |
15365557 |
T |
|
| Q |
200 |
ttagtagcatgatcgtgcttataataaaaagacttaaatcctccatatattcgaccttctccagagttagtgctaagaaagacgaggacaacctaaaatg |
299 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
15365556 |
ttagttgcatcatcgtgcttataataaaaagacttaaatcctccatatgttcaaccttctccagagttagtgctaggaaagactaggacaacctaaaatg |
15365457 |
T |
|
| Q |
300 |
aggaaaaatgtaataaaatcatatcttaaaaccctaagctaagaaacaaaatgtagaacaaaattaaaggcgaaaagagccctttcagcacgatagatgc |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| | ||||||||||||||||||||| |
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| T |
15365456 |
aggaaaaatgtaataaaatcatatcttaaaaccctaagctaagaaacaaaacgtagaacaaaattaaaggtgaaaaaaaccctttcagcacgatagatgc |
15365357 |
T |
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| Q |
400 |
aacctcgatgttggttgttgt |
420 |
Q |
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| T |
15365356 |
aacctcgatattggttgttgt |
15365336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 15329589 - 15329168
Alignment:
| Q |
1 |
agcatctttcttataggcaagatgataataatataactttttctagtattattccccctctatcccaaaacaaaagataaagttgtgtttctcaaagatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
15329589 |
agcatctttcttataggcaagatgataataatataactttttctagtattattccccctctatcctaaaacaaaagataaagttgtgtttctcaaagatg |
15329490 |
T |
|
| Q |
101 |
tttcatcctttccctttcctagaaaagatgaagcttctatgaaaaatgcaactttatctttgcttttgggagaaatggagaattctattaggaaaagttt |
200 |
Q |
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||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
15329489 |
tttcatcctttccctttcctaaaaaagatgaagcatctatgaaaaatacaactttatctttgcttttgggagaaatggggaattctattagaaaaagttt |
15329390 |
T |
|
| Q |
201 |
tagtagcatgatcgtgcttataataaaaagacttaaatcctccatatattcgaccttctccagagttagtgctaagaaagacgaggacaacctaaaatga |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||| |
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| T |
15329389 |
tagtagcatcgtcgtgcttataataaaaagacttaaatcctccatatattcgaccttgtccagagttagtgctaggaaagaagaggacaacctaaaatga |
15329290 |
T |
|
| Q |
301 |
ggaaaaatgtaataaaatcatatcttaaaaccctaagctaagaaacaaaatgtagaacaaaattaaaggcgaaaagagccctttcagcacgatag--atg |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||| || ||| |
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| T |
15329289 |
ggaaaaatgtaataaaatcatatcttaaaaccctaagctaagaaacaaaacgtagaacaaaattaaaggcaaaaaaagccctttcagcacgaaagatatg |
15329190 |
T |
|
| Q |
399 |
caacctcgatgttggttgttgt |
420 |
Q |
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|||||| ||| ||||||||||| |
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| T |
15329189 |
caaccttgatattggttgttgt |
15329168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0576 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0576
Description:
Target: scaffold0576; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 35 - 420
Target Start/End: Complemental strand, 10493 - 10107
Alignment:
| Q |
35 |
aactttttctagtattattccccc-tctatcccaaaacaaaagataaagttgtgtttctcaaagatgtttcatcctttccctttcctagaaaagatgaag |
133 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10493 |
aactttttctagtagtattcccccctctatcccaaaacaaaagataaagttgtgtttctcaaagatgtttcatcctttccctttcctaaaaaagatgaag |
10394 |
T |
|
| Q |
134 |
cttctatgaaaaatgcaactttatctttgcttttgggagaaatggagaattctattaggaaaagttttagtagcatgatcgtgcttataataaaaagact |
233 |
Q |
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| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
10393 |
catctatgaaaaatgtaactttatctttgcttttgggagaaatggggaattctattaggaaaagttttagttgcatcatcgtgcttataataaaaagact |
10294 |
T |
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| Q |
234 |
taaatcctccatatattcgaccttctccagagttagtgctaagaaagacgaggacaacctaaaatgaggaaaaatgtaataaaatcatatcttaaaaccc |
333 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10293 |
taaatcctccatatgttcaaccttctccagagttagtgctaggaaagactaggacaacctaaaatgaggaaaaatgtaataaaatcatatcttaaaaccc |
10194 |
T |
|
| Q |
334 |
taagctaagaaacaaaatgtagaacaaaattaaaggcgaaaagagccctttcagcacgatagatgcaacctcgatgttggttgttgt |
420 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||| | |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10193 |
taagctaagaaacaaaacgtagaacaaaattaaaggtgaaaaaaaccctttcagcacgatagatgcaacctcgatattggttgttgt |
10107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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