View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12063_high_1 (Length: 232)
Name: NF12063_high_1
Description: NF12063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12063_high_1 |
 | |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold1779 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 18342984 - 18342780
Alignment:
| Q |
15 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18342984 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
18342885 |
T |
|
| Q |
115 |
atcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaagaag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18342884 |
atcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaagaag |
18342785 |
T |
|
| Q |
215 |
gaaat |
219 |
Q |
| |
|
||||| |
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|
| T |
18342784 |
gaaat |
18342780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 76 - 219
Target Start/End: Complemental strand, 48288862 - 48288724
Alignment:
| Q |
76 |
aaagcagtaccaaattcatctttagaaagatctgaagtgatcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataa |
175 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||| ||| | |||| ||| ||||||||||||||||||| || ||| ||||||||||| |
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|
| T |
48288862 |
aaaggagtatcaaattcatctttagaaagatctgaagtgattaggagtc-aattatac----ttgtaaagaactaaaacgtggtgatgatataataataa |
48288768 |
T |
|
| Q |
176 |
agtatgatgataatgcggcggttctcattgataaagaaggaaat |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48288767 |
agtatgatgataatgcggcggttctcattgataaagaaggaaat |
48288724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 36840757 - 36840553
Alignment:
| Q |
15 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36840757 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
36840658 |
T |
|
| Q |
115 |
atcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaagaag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36840657 |
atcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaagaag |
36840558 |
T |
|
| Q |
215 |
gaaat |
219 |
Q |
| |
|
||||| |
|
|
| T |
36840557 |
gaaat |
36840553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 164380 - 164584
Alignment:
| Q |
15 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
114 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||| |
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|
| T |
164380 |
cataggagctagtaatcaacggtatgcttatattggtgacattgttgttgatgtaatcaaaaaagcagtatcaaattcatctttagaaatatctgaagtg |
164479 |
T |
|
| Q |
115 |
atcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaagaag |
214 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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|
| T |
164480 |
atcagggttgtaactgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggtggttctcattgataatgaag |
164579 |
T |
|
| Q |
215 |
gaaat |
219 |
Q |
| |
|
||||| |
|
|
| T |
164580 |
gaaat |
164584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 14249346 - 14249142
Alignment:
| Q |
15 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
114 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||| |
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|
| T |
14249346 |
cataggagctagtaatcaacggtatgcttatattggtgacattgttgttgatgtaatcaaaaaagcagtatcaaattcatctttagaaatatctgaagtg |
14249247 |
T |
|
| Q |
115 |
atcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaagaag |
214 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
14249246 |
atcagggttgtaactgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggtggttctcattgataatgaag |
14249147 |
T |
|
| Q |
215 |
gaaat |
219 |
Q |
| |
|
||||| |
|
|
| T |
14249146 |
gaaat |
14249142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 46699234 - 46699127
Alignment:
| Q |
15 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46699234 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaataaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
46699135 |
T |
|
| Q |
115 |
atcagggc |
122 |
Q |
| |
|
|||||||| |
|
|
| T |
46699134 |
atcagggc |
46699127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 733 - 937
Alignment:
| Q |
15 |
cataggagctagtaatcgacggtatgcttatattggtgacattgttgttgctgtaatcaaaaaagcagtaccaaattcatctttagaaagatctgaagtg |
114 |
Q |
| |
|
|||||||||||||||||| || |||||| ||||||||||| || |||||||||| ||||| |||||||||||||| || || |||||||||| |||||| |
|
|
| T |
733 |
cataggagctagtaatcgccgatatgctcatattggtgacgttattgttgctgtgatcaaggaagcagtaccaaatacacctctagaaagatcagaagtg |
832 |
T |
|
| Q |
115 |
atcagggctgtaattgtacgtacttgtaaagaactaaaacgtagtaatggtataataataaagtatgatgataatgcggcggttctcattgataaagaag |
214 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||| || || || |||||| |||||||| ||||| || ||| |||||||| |||||| |
|
|
| T |
833 |
atcagagctgtaattgtacgtacttgtaaagaactcaaacgcgacaacgggatgataatacgatatgatgacaatgctgccgttgtcattgatcaagaag |
932 |
T |
|
| Q |
215 |
gaaat |
219 |
Q |
| |
|
||||| |
|
|
| T |
933 |
gaaat |
937 |
T |
|
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