View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12063_high_13 (Length: 333)

Name: NF12063_high_13
Description: NF12063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12063_high_13
NF12063_high_13
[»] chr2 (1 HSPs)
chr2 (13-333)||(8930887-8931207)


Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 333
Target Start/End: Original strand, 8930887 - 8931207
Alignment:
Q  13 gaacctgtggcaaatatgtgaatgagtttattacgaataaactaacagataaaatttaaagtttactagtttaaaagtgaatagttgaaccaattatatt 112  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8930887 gaacctgtgacaaatatgtgaatgagtttattacgattaaactaacagataaaatttaaagtttactagtttaaaagtaaatagttgaaccaattatatt 8930986  T
Q  113 gcaacccaccaaagggcaagctgttagtttctataggagggtctgtacaccccatggcaagattctaaacccatcctcgcagggacgtgtcttaggccca 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8930987 gcaacccaccaaagggcaagctgttagtttctataggagggtctgtacaccccatggcaagattctaaacccttcctcgcagggacgtgtcttaggccca 8931086  T
Q  213 accgtttgttatagctagggggcgactagggtgagggaggcgatagccctcgcagtacggtttagtggttttattgtaatctgaatcgtagtaactagta 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8931087 accgtttgttatagctagggggcgactagggtgagggaggcgatagccctcgcagtacggttcagtggttttattgtaatctgaatcgtagtaactagta 8931186  T
Q  313 atatatattgcttgtaaaact 333  Q
    |||||||||||||||||||||    
T  8931187 atatatattgcttgtaaaact 8931207  T

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