View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12063_high_14 (Length: 317)
Name: NF12063_high_14
Description: NF12063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12063_high_14 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 12 - 317
Target Start/End: Complemental strand, 24494908 - 24494603
Alignment:
| Q |
12 |
atgaagttcagagagaagtgatgacaaccagagaacttctgcagatgcggatgctagagctctatattcagcttcagtggatgatcttgcaacggctttt |
111 |
Q |
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| T |
24494908 |
atgaagttcagagagaagtgatgacaaccagagaacttctgcagatgcggatgctagagctctatattcagcttcagtggatgatcttgcaacggctttt |
24494809 |
T |
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| Q |
112 |
tgtttaaaagacttccaagaaattgggttaccaccataaaatgtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcac |
211 |
Q |
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| T |
24494808 |
tgtttaaaagacttccaagaaattgggttaccaccataaaatgtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcac |
24494709 |
T |
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| Q |
212 |
tgaatgcataaagattttgagaagaagtgtgcttcaagtgaagtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggatgtaaagtg |
311 |
Q |
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| T |
24494708 |
tgaatgcataaagattttgagaagaagtgtgcttcaagtgaagtccatgaaacatggtggctttgagatatcaaagaagtcttttcaaggctgtaaagtg |
24494609 |
T |
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| Q |
312 |
tgtaga |
317 |
Q |
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|||||| |
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| T |
24494608 |
tgtaga |
24494603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 144 - 317
Target Start/End: Complemental strand, 94126 - 93953
Alignment:
| Q |
144 |
accataaaatgtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgc |
243 |
Q |
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| T |
94126 |
accataaaatgtaacatgtgcagaggtggatgtataatcatctcgatttccagcccaatcggcatcactgaatgcatatagattttgagaagaagtgcac |
94027 |
T |
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| Q |
244 |
ttcaagtgaagtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggatgtaaagtgtgtaga |
317 |
Q |
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| T |
94026 |
ttcaagtgaagtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggttgtaaagtgtgtaga |
93953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 86373 - 86237
Alignment:
| Q |
12 |
atgaagttcagagagaagtgatgacaaccagagaacttctgcagatgcggatgctagagctctatattcagcttcagtggatgatcttgcaacggctttt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
86373 |
atgaagttcagagagaagtgatgacaaccagagaacttctgcggatgcgtatgctagagctctgtattcagcttcagtggatgatcttgcaacaaatttt |
86274 |
T |
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| Q |
112 |
tgtttaaaagacttccaagaaattgggttaccaccat |
148 |
Q |
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| T |
86273 |
tgtttaaaagacttccaagaaattgggttaccaccat |
86237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 18557084 - 18557131
Alignment:
| Q |
12 |
atgaagttcagagagaagtgatgacaaccagagaacttctgcagatgc |
59 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18557084 |
atgaagttcagagagaagtgatgacaaccagagaacttctgcggatgc |
18557131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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