View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12063_high_4 (Length: 525)
Name: NF12063_high_4
Description: NF12063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12063_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 23564426 - 23564293
Alignment:
| Q |
30 |
gctttcaatgagcttttggcgatttcactatcagccaaaacatacacttaatcacacatttgatgcaatggcacaatctttaccattccgttcaaagatt |
129 |
Q |
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| T |
23564426 |
gctttcaatgagcttttggcgatttcactgtcaaccaaaacatacactaaatcacacatttgatgcaatggcacaatctttaccattccgtttaaagatt |
23564327 |
T |
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| Q |
130 |
agactgtccatattccaaatttataaattaaaaa |
163 |
Q |
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| T |
23564326 |
agactatccatattccaaatttataaattaaaaa |
23564293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 155 - 264
Target Start/End: Original strand, 23566183 - 23566292
Alignment:
| Q |
155 |
aattaaaaatactaaagtcagaacttcgattgtttgattttgatctgatagtcggtgcatgaaatctaaacttattagatattatgaatgaaatatttac |
254 |
Q |
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| T |
23566183 |
aattaaaaatactaaagtcagaacttggatcgcttgattttgatctgatggtcggtgcatgaaatctaaagttattagatctgatgaatgaaatatttat |
23566282 |
T |
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| Q |
255 |
gttgaaaaat |
264 |
Q |
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| T |
23566283 |
gttgagaaat |
23566292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 43 - 297
Target Start/End: Original strand, 23576544 - 23576802
Alignment:
| Q |
43 |
ttttggcgatttcactatcagccaaaacatacacttaatcacacatttgatgcaatggcacaatctttaccattccgttcaaagattagactgtccatat |
142 |
Q |
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| T |
23576544 |
ttttggcgatttcactatcaaccaaaaaatatactaaatcagacattcgacacattgacacagtctttaccatccggtcaaaagattagaccgaacatgt |
23576643 |
T |
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| Q |
143 |
tccaaatttataaatt-----aaaaatactaaagtcagaacttcgatt-gtttgattttgatctgatagtcggtgcatgaaatctaaacttattagatat |
236 |
Q |
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| T |
23576644 |
tacaaatttataaatttgattaaatatactaa-gtca-aacttgaaatcgtctgattttgatttgatagttggtgcatgaaatctaaatctattagatcg |
23576741 |
T |
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| Q |
237 |
tatgaatgaaatatttacgttgaaaaattatggatttaatctatgtcaggctcaccgctat |
297 |
Q |
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| T |
23576742 |
gataaatgaaatatttatgttaagtaattgtggatttaatctatgtcaggctcactgctat |
23576802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 190 - 297
Target Start/End: Original strand, 23596261 - 23596368
Alignment:
| Q |
190 |
gattttgatctgatagtcggtgcatgaaatctaaacttattagatattatgaatgaaatatttacgttgaaaaattatggatttaatctatgtcaggctc |
289 |
Q |
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| T |
23596261 |
gattttgatttgatcgttggtgcatgaaatctaaatctatttgatcggatgaatgaaatatttatgttgagaaattgtggatttaatctataccaggctc |
23596360 |
T |
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| Q |
290 |
accgctat |
297 |
Q |
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| T |
23596361 |
actgctat |
23596368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 190 - 297
Target Start/End: Original strand, 23605183 - 23605290
Alignment:
| Q |
190 |
gattttgatctgatagtcggtgcatgaaatctaaacttattagatattatgaatgaaatatttacgttgaaaaattatggatttaatctatgtcaggctc |
289 |
Q |
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||||||||| |||| || ||||||||||||||||| |||| ||| |||||||||||||||| ||||| ||||| |||||||||||||| ||||||| |
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| T |
23605183 |
gattttgatttgatcgttggtgcatgaaatctaaatctatttgatcggatgaatgaaatatttatgttgagaaattgtggatttaatctataccaggctc |
23605282 |
T |
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| Q |
290 |
accgctat |
297 |
Q |
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| T |
23605283 |
actgctat |
23605290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 504
Target Start/End: Original strand, 23566316 - 23566362
Alignment:
| Q |
458 |
aagaatctgaagatcatgaaggagaaatgtcagtcatttgagttcac |
504 |
Q |
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| T |
23566316 |
aagaatctgaagatcatgaaggagaaatgtcaaccattcgagttcac |
23566362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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