View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12063_high_5 (Length: 514)
Name: NF12063_high_5
Description: NF12063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12063_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 12 - 485
Target Start/End: Complemental strand, 3480210 - 3479737
Alignment:
| Q |
12 |
gcagaacctgtgtttagcaaggcaggagaaacaattggagtaaaccatatgggaatggaaataaccgatcaggtaaaaattgttattttgcttttcgaag |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3480210 |
gcagaacctgtgtttagcaaggcaggagaaacaattggagtaaaccatatgggaatggaaataaccgatcaggtaaaaattgttattttgctttttgaag |
3480111 |
T |
|
| Q |
112 |
ttacttgcattgtcttaaaattttggttgggcttaactcatccaatgtaaggtgtgagctgctccgacttattataaacaaatttacaagcaatatctca |
211 |
Q |
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| T |
3480110 |
ttacttgcattgtcttaaaattttggttgggcttaactcatccaatgtaaggtgtgagctgccccgacttattataaacaaatttacaagcaatatctca |
3480011 |
T |
|
| Q |
212 |
tccaatgtgatctatgaagtgtgactcgagtgacccgatatcaggccactaaggtcacgctttagatatctagtcgtgggcgtgaatatgtgtttataag |
311 |
Q |
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| T |
3480010 |
tccaatgtgatctatgaagtgtgactcgagtgacccgatatcaggccactaaggtcactctttagatatctagtcgtgggcgtgaatatgtgtttataag |
3479911 |
T |
|
| Q |
312 |
tgggggatgtcttaaccttataagtcttcactaaattctaatacatttcaatcttgtttttgtgaaaataatatttataatttcgaaaaacaattgcagg |
411 |
Q |
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| T |
3479910 |
tgggggatgtcttaaccttataagtcttcaccaaattctaatacatttcaatcttgtttttgtgaaaataatatttataattttgaaaaacaattgcagg |
3479811 |
T |
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| Q |
412 |
tgagaaaaagagaaagaatggcaaagctaagggaagaaattgcagttcagaaagcaaaggaaacagaacttaat |
485 |
Q |
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| T |
3479810 |
tgagaaaaagagaaaaaatggcaaagctaagggaagaaattgcagttcagaaagcaaaggaaacagaacttaat |
3479737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 365 - 485
Target Start/End: Complemental strand, 3455490 - 3455372
Alignment:
| Q |
365 |
ttgtttttgtgaaaataatatttataatttcgaaaaacaattgcaggtgagaaaaagagaaagaatggcaaagctaagggaagaaattgcagttcagaaa |
464 |
Q |
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||||| ||||||| | |||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455490 |
ttgttcttgtgaagaaaatatttataatatcaaaaaa--atcgcaggtgagaaaaagagaaagaatggcaaagctaagggaagaaattgcagttcagaaa |
3455393 |
T |
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| Q |
465 |
gcaaaggaaacagaacttaat |
485 |
Q |
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| T |
3455392 |
gcaaaggaaacagaacttaat |
3455372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 3455606 - 3455519
Alignment:
| Q |
14 |
agaacctgtgtttagcaaggcaggagaaacaattggagtaaaccatatgggaatggaaataaccgatcaggtaaaaattgttattttg |
101 |
Q |
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| T |
3455606 |
agaacctgtgtttagcaaggcaggtgaaacaattggagtaaactatatgggaatggaaataacagatcaggtaaatattgttattttg |
3455519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 409 - 481
Target Start/End: Original strand, 48694965 - 48695037
Alignment:
| Q |
409 |
aggtgagaaaaagagaaagaatggcaaagctaagggaagaaattgcagttcagaaagcaaaggaaacagaact |
481 |
Q |
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| T |
48694965 |
aggttagaaaaagagaaaggatggcgaagattcgcgaagagattgctgttcagaaagcaaaggaaacagaact |
48695037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 48694740 - 48694814
Alignment:
| Q |
14 |
agaacctgtgtttagcaaggcaggagaaacaattggagtaaaccatatgggaatggaaataaccgatcaggtaaa |
88 |
Q |
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| T |
48694740 |
agaacctgtattcagcaaggcaggtgaaacaattggaatcaattacatgggaatggatgtaaccgatcaggtaaa |
48694814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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