View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12063_high_8 (Length: 414)

Name: NF12063_high_8
Description: NF12063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12063_high_8
NF12063_high_8
[»] chr1 (6 HSPs)
chr1 (27-293)||(37881940-37882205)
chr1 (224-292)||(37911890-37911958)
chr1 (331-385)||(37881848-37881902)
chr1 (337-385)||(37855620-37855668)
chr1 (337-385)||(37867808-37867856)
chr1 (337-385)||(37911793-37911841)
[»] scaffold0187 (5 HSPs)
scaffold0187 (201-292)||(6441-6533)
scaffold0187 (328-385)||(6571-6628)
scaffold0187 (337-385)||(16908-16956)
scaffold0187 (337-385)||(27236-27284)
scaffold0187 (162-199)||(6387-6424)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 27 - 293
Target Start/End: Complemental strand, 37882205 - 37881940
Alignment:
Q  27 atcacaatagtagcggtcatgactgcatccaccactgcaagttcgcaaccacaatctgtgttttgataactatgatctctttactgaagttccttagcnn 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  37882205 atcacaatagtagcggtcatgactgcatccaccactgcaagttcgcaaccacaatctgtgttttgataactatgatctctttactgaagttccttagcaa 37882106  T
Q  127 nnnnnnnngtaacttacgagtggaacattttatccgaatactttgcactgttctctaaattagaattaaattatagacatgaagaaagaataaactt-aa 225  Q
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37882105 aaaaaa--gtaacttacgagtggaacactttatccgaatactttgcactgttctctaaattagaattaaattatagacatgaagaaagaataaacttgaa 37882008  T
Q  226 agattattcatatttacattaattggcatagctcacaaatgataatcaataactaattacaacagaga 293  Q
    ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||    
T  37882007 agattattcatatttacattacttggcatggttcacaaatgataatcaataactaattacaacagaga 37881940  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 224 - 292
Target Start/End: Complemental strand, 37911958 - 37911890
Alignment:
Q  224 aaagattattcatatttacattaattggcatagctcacaaatgataatcaataactaattacaacagag 292  Q
    ||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||    
T  37911958 aaagattattcatatttacattacttggcatggttcacaaatgataatcaataactaattacaacagag 37911890  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 37881902 - 37881848
Alignment:
Q  331 tgttcgtatcctactgatcaggttgagcttgccagtgaatttgagattcagaaat 385  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  37881902 tgttcgtatcctactgatcaggttgagcttggcaatgaatttgagattcagaaat 37881848  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 337 - 385
Target Start/End: Complemental strand, 37855668 - 37855620
Alignment:
Q  337 tatcctactgatcaggttgagcttgccagtgaatttgagattcagaaat 385  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||    
T  37855668 tatcctactgatcaggttgagcttggcaatgaatttgagattcagaaat 37855620  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 337 - 385
Target Start/End: Complemental strand, 37867856 - 37867808
Alignment:
Q  337 tatcctactgatcaggttgagcttgccagtgaatttgagattcagaaat 385  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||    
T  37867856 tatcctactgatcaggttgagcttggcaatgaatttgagattcagaaat 37867808  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 337 - 385
Target Start/End: Complemental strand, 37911841 - 37911793
Alignment:
Q  337 tatcctactgatcaggttgagcttgccagtgaatttgagattcagaaat 385  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||    
T  37911841 tatcctactgatcaggttgagcttggcaatgaatttgagattcagaaat 37911793  T

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Target: scaffold0187 (Bit Score: 61; Significance: 5e-26; HSPs: 5)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 201 - 292
Target Start/End: Original strand, 6441 - 6533
Alignment:
Q  201 agacatgaagaaagaataaactt-aaagattattcatatttacattaattggcatagctcacaaatgataatcaataactaattacaacagag 292  Q
    |||| |||||| ||||||||||| |||| |||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||    
T  6441 agacgtgaagagagaataaacttgaaaggttattcatatttacattacttggcatggttcacaaatgataatcaataactaattacaacagag 6533  T

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Target: scaffold0187; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 385
Target Start/End: Original strand, 6571 - 6628
Alignment:
Q  328 gattgttcgtatcctactgatcaggttgagcttgccagtgaatttgagattcagaaat 385  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  6571 gattgttcgtatcctactgatcaggttgagcttggcaatgaatttgagattcagaaat 6628  T

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Target: scaffold0187; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 337 - 385
Target Start/End: Original strand, 16908 - 16956
Alignment:
Q  337 tatcctactgatcaggttgagcttgccagtgaatttgagattcagaaat 385  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||    
T  16908 tatcctactgatcaggttgagcttggcaatgaatttgagattcagaaat 16956  T

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Target: scaffold0187; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 385
Target Start/End: Original strand, 27236 - 27284
Alignment:
Q  337 tatcctactgatcaggttgagcttgccagtgaatttgagattcagaaat 385  Q
    |||||||||||||||||||| |||| || ||||||||||||||||||||    
T  27236 tatcctactgatcaggttgaccttggcaatgaatttgagattcagaaat 27284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 6387 - 6424
Alignment:
Q  162 gaatactttgcactgttctctaaattagaattaaatta 199  Q
    ||||||||||||||||||||||||||| || |||||||    
T  6387 gaatactttgcactgttctctaaattaaaactaaatta 6424  T

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