View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12064_high_1 (Length: 515)
Name: NF12064_high_1
Description: NF12064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12064_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 230 - 416
Target Start/End: Complemental strand, 17166275 - 17166089
Alignment:
| Q |
230 |
tgtttttaaggtgagaatttcacttgttagaaactctttcgagaacctatctatttttaatgtaggatttgagttttcctcaacatcctattttaaatat |
329 |
Q |
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| T |
17166275 |
tgtttgtaaggtgagaatttcacttgttaggaactctttcgagaacctatttatttttaatgtaggatttgagttttcctcaacaacctattttaaatat |
17166176 |
T |
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| Q |
330 |
ttcagatgaaatgacgtaaatctctttcaacttaaatagaagattttagagtattaacatttaaatttgtcattctacatacacttt |
416 |
Q |
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| T |
17166175 |
ttcagatgaaatgacgtaaatctctttcaatttaaataggagattttagagtattaacatttaaatttatcattctacatacacttt |
17166089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 17166435 - 17166274
Alignment:
| Q |
18 |
attcttgctttggaaatgtatctttcctaaattaattatcaaagttgcttatatgtatatattaggttttttattatgtctttcttatcttacaaatcgg |
117 |
Q |
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| T |
17166435 |
attcttgctttggaaatgcatctttcctaaatta----tcaaagttgcttatatgtatatattaggttttttattatgtctttcttatcttacaaatcag |
17166340 |
T |
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| Q |
118 |
tttataatgtaatgagtgtcactctttagaaacttatttcaaatcttaactgttttcgatgtgatg |
183 |
Q |
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| T |
17166339 |
tttgtaatgtaatgagtgtcattctttagaaacgtatttcaaatcttaactgttttcgatgtgatg |
17166274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 447 - 505
Target Start/End: Complemental strand, 17166088 - 17166030
Alignment:
| Q |
447 |
accttatattatgatttcattttcttacaaatttacatctttttggcttagggtctctg |
505 |
Q |
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| T |
17166088 |
accttatattatgatttcattttcttacaaatttacatctttttggcttagggtctctg |
17166030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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