View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12064_high_2 (Length: 422)
Name: NF12064_high_2
Description: NF12064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12064_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 29415980 - 29416162
Alignment:
| Q |
16 |
atgaactgccgagattcaattgtgtgtgaaacttctgagatccacattgcgtatacaaagccgctaggattgtagattgatgactgagattcgctattgg |
115 |
Q |
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| T |
29415980 |
atgaactgccgagattcaattgtgtgtgaaacttctgagatccacattgcgtatacaaagcctctaggattgtagattgatgactgagattcgctattgg |
29416079 |
T |
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| Q |
116 |
tgaattcacgactgcagccaagccaatcttaggcccttgtaactaaagttgaggattacataaatagtttaattcagtggcac |
198 |
Q |
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| T |
29416080 |
tgaattcacgactgcagccaagccaatcttaggcccttgtaactaaagttgaggattacataaatagtttaattcagtggcac |
29416162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 298 - 404
Target Start/End: Original strand, 29416262 - 29416368
Alignment:
| Q |
298 |
tttttgttggaagagaaggcaaattaaaacaaacactaaggtaggtgcctcctttagtgatactttgatgagaatggaacttcacattggttggaaaatg |
397 |
Q |
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| T |
29416262 |
tttttgttggaagagaaggcaaattaaaacaaacactaaggtaggtgcctcctttagtgatactttgatgagaatggaacttcacattggttggaaaatg |
29416361 |
T |
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| Q |
398 |
atagaac |
404 |
Q |
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| T |
29416362 |
atagaac |
29416368 |
T |
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