View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12064_low_3 (Length: 286)
Name: NF12064_low_3
Description: NF12064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12064_low_3 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 1967044 - 1966777
Alignment:
| Q |
1 |
tatatttctcaactacaaaagagttgcacaggaatacaccataaacacaagcgataactatcaacctttgaaaatatattggctatatatttcaattttg |
100 |
Q |
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| T |
1967044 |
tatatttctcaactacaaatgagttgcacaggaatacaccataaacacaagcgataactatcaacctttaaaaatacattggttatatatttcaattttg |
1966945 |
T |
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| Q |
101 |
ataaatcaaaccaattatatctaccgtctatattttgatcactcttccaaactctatacaaaagtatcaatattaaagtcattgactccaaaatttccac |
200 |
Q |
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| T |
1966944 |
ataaatcaaaccaattttatctaccgtctatattttgatcactattccaaactctatacaaaagtattaatattaaagtcattgactccaaaatttccac |
1966845 |
T |
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| Q |
201 |
aaaattcatacatacacatgtcatgctagagatgaaattatgctattgtttttctatatggacacaac |
268 |
Q |
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| T |
1966844 |
aaaattcatacatacacatgtcatgctagagatgaaattatgctattgtttttctatatggacacaac |
1966777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 3 - 268
Target Start/End: Original strand, 8990830 - 8991095
Alignment:
| Q |
3 |
tatttctcaactacaaaagagttgcacaggaatacaccataaacacaagcgataactatcaacctttgaaaatatattggctatatatttcaattttgat |
102 |
Q |
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| T |
8990830 |
tatttctcaactacaaatgagttgctcaagaatacaccataaacacaagcgataactatcaacctttgaaaatacattgactatatatttcaattttgat |
8990929 |
T |
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| Q |
103 |
aaatcaaaccaattatatctaccgtctatattttgatcactcttccaaactctatacaaaagtatcaatattaaagtcattgactccaaaatttccacaa |
202 |
Q |
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| T |
8990930 |
aaatcaaaccaattttatctaccgtctatattttgatcactattccaaactctatacaaaagtattaatattaaagtcactgactccaaaatttccacaa |
8991029 |
T |
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| Q |
203 |
aattcatacatacacatgtcatgctagagatgaaattatgctattgtttttctatatggacacaac |
268 |
Q |
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| T |
8991030 |
aattcatacatacacatgtcatgctagagatgaaattatgctattgtttttctatatggacacaac |
8991095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 6951634 - 6951749
Alignment:
| Q |
1 |
tatatttctcaactacaaaagagttgcacaggaatacaccataaacacaagcgataactatcaacctttgaaaatatattggctatatatttcaattttg |
100 |
Q |
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| T |
6951634 |
tatatttctcaactacaaatgagttgcacaggaatacaccataaacacaagcgataactatcaacctttgaaaatacattggctatatatttcaattttg |
6951733 |
T |
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| Q |
101 |
ataaatcaaaccaatt |
116 |
Q |
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| T |
6951734 |
ataaatcaaaccaatt |
6951749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 95 - 268
Target Start/End: Complemental strand, 31181808 - 31181636
Alignment:
| Q |
95 |
attttgataaatcaaaccaattatatctaccgtctatattttgatcactcttccaaactctatacaaaagtatcaatattaaagtcattgactccaaaat |
194 |
Q |
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||||||| ||| |||||||||| ||||| ||||||||| |||||||| |||||||||| | |||||||||| ||||| || ||||||||||||||||| |
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| T |
31181808 |
attttgacaaaccaaaccaattttatctgatgtctatattctgatcactattccaaactcaagacaaaagtattaatataaaggtcattgactccaaaat |
31181709 |
T |
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| Q |
195 |
ttccacaaaattcatacatacacatgtcatgctagagatgaaattatgctattgtttttctatatggacacaac |
268 |
Q |
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| T |
31181708 |
ttccacaaaattcatacatacacatatcatgctagagatgaaattatgctattg-ttttctttatggacacaac |
31181636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 111249 - 111179
Alignment:
| Q |
95 |
attttgataaatcaaaccaattatatctaccgtctatattttgatcactcttccaaactctatacaaaagt |
165 |
Q |
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| T |
111249 |
attttgacaaaccaaaccaattttatctaccgtctatattttgatcactattccaaactctatgcaaaagt |
111179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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