View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12065_high_14 (Length: 265)
Name: NF12065_high_14
Description: NF12065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12065_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 36204853 - 36205096
Alignment:
| Q |
1 |
aaatctatctagctatacaacatttatgagtcnnnnnnngcatattttgtgatgtatctgcaaaatctatctaactaaaagatttcatgaattatagtga |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
36204853 |
aaatctatctagctatacaacatttatgagtctttttt-gcatattttgtaatgtatctgcaaaatctttgtaactaaaagatttcatgaattatagtga |
36204951 |
T |
|
| Q |
101 |
tctaatt--------tcagtacaatagcttgacagtacctccatgatatgagagttatttgacagttgttagtttcgtgcaattttatacaatagtttc- |
191 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36204952 |
tctaattaatggtattcagtacaatagcttgacagtacctccatgatatgagagtcttttgacagttgatagtttcgtgcaattttatacaatagtttca |
36205051 |
T |
|
| Q |
192 |
-agtgtgtgtcaccgtgattttttcaaattcattgtgattccaaa |
235 |
Q |
| |
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||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
36205052 |
tagtgtgtgtcatcgtgattttttcaaactcattgtgattccaaa |
36205096 |
T |
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