View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12065_high_15 (Length: 250)
Name: NF12065_high_15
Description: NF12065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12065_high_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 31974676 - 31974433
Alignment:
| Q |
1 |
aagtgtaatatagatggtgtcgcatctggtactccacctataactgcttttgaatgtattttcaggaacaacgaatctcactctttaggttgcattgcag |
100 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||| |||||| ||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31974676 |
aagtgtaatatagatggtgtcgcaccttgtactccacctataactacttttgcatgtatttttaggaacaatgaatctcactctttaggttgcattgcag |
31974577 |
T |
|
| Q |
101 |
gtattttctatggttctaggctataaatatacctcgtttatgaggcattgggacatctttagacttgtaaactcactgcaaagttgaatacaagttcttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| | ||| |||||||||| |||||| ||| |
|
|
| T |
31974576 |
gtattttctatggttctaggctataaatattcctcatttatgaggcattgggacatctttagacttgtaatcctactccaaagttgaaatcaagttgttg |
31974477 |
T |
|
| Q |
201 |
atgttttcttaagcttttcttctttatttgcattcctttgcttc |
244 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31974476 |
aagttttcttaagcttttcttctttatttgcattcctttgcttc |
31974433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 20488324 - 20488246
Alignment:
| Q |
157 |
ctttagacttgtaaactcactgcaaagttgaatacaagttcttgatgttttcttaagcttttcttctttatttgcattc |
235 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| |||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
20488324 |
ctttagacttgtaatctcactccaaagttgaattcaagttcttgcaattttcttaagcttttgttctttatttgcattc |
20488246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University