View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12065_high_16 (Length: 245)
Name: NF12065_high_16
Description: NF12065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12065_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 36204850 - 36204624
Alignment:
| Q |
1 |
cagattttcttttcttttcaatccagtgagtaaccagtttgctcttttcctattgaaggtggtgccaattaatttcacttgtatacattaaaccttatag |
100 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36204850 |
cagattttcttttcttttcaatccagtgagtaccaagtttgctcttttcctattgaaggtggtgctaattaatttcacttgtatacattaaaccttatag |
36204751 |
T |
|
| Q |
101 |
cacatgcccttgtgagagttgtgctgtgtctaatacatataatctctaacttttatctccctcattcaaagttataaaactaagaaaaaagcattgagaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
36204750 |
cacatgcccttgtgagagttgtgctgtgtctaatacatataatctctaacttttatctccctcattcaaagttataaaattaacaaaaaagcattgagag |
36204651 |
T |
|
| Q |
201 |
acataattccaaaaacatgcaacaaaa |
227 |
Q |
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||||||||| ||||||||||||||||| |
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| T |
36204650 |
acataattctaaaaacatgcaacaaaa |
36204624 |
T |
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