View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12065_high_6 (Length: 448)
Name: NF12065_high_6
Description: NF12065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12065_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 37882019 - 37881595
Alignment:
| Q |
18 |
ggtacaaattgttatatgaatttaattaaattctttttctctaatgtattgtacttattagtttctaatgaacttgttttgcttgaatactattacaggt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37882019 |
ggtacaaattgttatatgaatttaattaaattctttttctctaatgtattgtacttatta----ctaatgaacttgttttgcttgaatactattacaggt |
37881924 |
T |
|
| Q |
118 |
cttcaaaggtgtggcaagagttgtcgtcttcgatggacaaactatttgagacctgatatcaagagaggaaggttctcctttgaagaagaagagagtatca |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37881923 |
cttcaaaggtgtggtaagagttgtcgtcttcgatggacaaactatttgagacctgatatcaagagaggaaggttctcctttgaagaagaagagagtatca |
37881824 |
T |
|
| Q |
218 |
ttcagctccacagtgtattgggaaacaagtacgtgtgttcatcaaattttaattggaatgaaagtgtcctaaaaatttttaattgtnnnnnnntatatcg |
317 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||| ||| |
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| T |
37881823 |
ttcagctccacagtgtcttgggaaacaagtacgtgtgttcatcaaattttaattggaatgaaagcgtcctaaatttttttaattgtaaaaaaatatgtcg |
37881724 |
T |
|
| Q |
318 |
atttggattctcttcagtggctgcatgatgcagcatctcacagactcttagatttagatatatctttaaatctaaggattttgtgcggccgctgcaggtg |
417 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || |
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| T |
37881723 |
atttggattctcttcagtgactgcatgatgcagcacctcacagactcttagatttagatatatctctaaatctaaggattttgtgcgaccgctgcagatg |
37881624 |
T |
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| Q |
418 |
atcagtacaataattttaccattaacttt |
446 |
Q |
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| T |
37881623 |
atcagtacaataattttaccattaacttt |
37881595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 121 - 209
Target Start/End: Original strand, 36246227 - 36246315
Alignment:
| Q |
121 |
caaaggtgtggcaagagttgtcgtcttcgatggacaaactatttgagacctgatatcaagagaggaaggttctcctttgaagaagaaga |
209 |
Q |
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||||| ||||| |||||||||||||| || |||||||||||| | |||| ||||| ||||||||| | ||||| |||||||||||||| |
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| T |
36246227 |
caaagatgtggaaagagttgtcgtctacgttggacaaactatctccgaccggatataaagagaggacgattctcttttgaagaagaaga |
36246315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 43560614 - 43560533
Alignment:
| Q |
113 |
caggtcttcaaaggtgtggcaagagttgtcgtcttcgatggacaaactatttgagacctgatatcaagagaggaaggttctc |
194 |
Q |
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| T |
43560614 |
caggacttcaaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagaggaatgttctc |
43560533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 41351287 - 41351209
Alignment:
| Q |
113 |
caggtcttcaaaggtgtggcaagagttgtcgtcttcgatggacaaactatttgagacctgatatcaagagaggaaggtt |
191 |
Q |
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| T |
41351287 |
cagggcttcaaaggtgtggtaagagttgtcgattaagatggataaattatttgagacctgatattagaagaggaaggtt |
41351209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 9231942 - 9232001
Alignment:
| Q |
115 |
ggtcttcaaaggtgtggcaagagttgtcgtcttcgatggacaaactatttgagacctgat |
174 |
Q |
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| T |
9231942 |
ggtcttcaaagatgtggcaaaagttgtcgtcttcgttggattaattacttgagacctgat |
9232001 |
T |
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