View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12065_low_10 (Length: 409)
Name: NF12065_low_10
Description: NF12065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12065_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 394
Target Start/End: Complemental strand, 8438454 - 8438077
Alignment:
| Q |
17 |
agcagagacgacgtgttgttatcacaaaagcaacaggcacagcagcttcagatgctaagaagaaaaaagatgcaagagttcaaagagttcacagcataga |
116 |
Q |
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| T |
8438454 |
agcagagacgacgtgttgttatcaccaaagcaacaggcacagcagcttcagatgctaagaagaaaaaagatgcaagagttcaaagagttcatagcataga |
8438355 |
T |
|
| Q |
117 |
agagttcgacgaagcacttgaatcagcaaaagacaaactcgttgttgttgagtacgctacaagcgacgactcagaaagcatagagatataccctttcttg |
216 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8438354 |
agagttcgacgaagcacttgaatcagcaaaagataaactcgttgttgttgagtacgctacaagcgacgactcagaaagcatagagatataccctttcttg |
8438255 |
T |
|
| Q |
217 |
gttgacctaagccgaacatgtaacgatgttgagtttcttcttgttatgggagatgaatcagagaaaacaaaagaactctgtaaaagagaaaaggttgata |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8438254 |
gttgacctaagccgaacatgtaacgatgttgagtttcttcttgttatgggagatgaatcagagaaaacaaaagaactctgtaaaagagaaaaggttgata |
8438155 |
T |
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| Q |
317 |
aagtaccacacttcactttctacaagagcaaagaaaaaattcatgaagaagaagctattggtccagatatgcttgttg |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8438154 |
aagtaccacacttcactttctacaagagcaaagaaaaaattcatgaagaagaagctattggtccagatatgcttgttg |
8438077 |
T |
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