View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12065_low_11 (Length: 400)
Name: NF12065_low_11
Description: NF12065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12065_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 21 - 371
Target Start/End: Original strand, 44052190 - 44052535
Alignment:
| Q |
21 |
gacgtggtactcttatcttacttacattccactccacaagtgtttgttaaataccggctactatagcttagcataatttcaacaaaccggattgaaatgt |
120 |
Q |
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| T |
44052190 |
gacgtggtactct-atcttacttacattccactccacaagtgtttgttaaatagcggctactatagcttagcataatttcaacaaaccggattgaaatgt |
44052288 |
T |
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| Q |
121 |
tcaagttaattttaatatttcttttttcgtaactacttttttagaaatttatccgatttgtcttctaatgtcattaatgtgatattgtgattttaggttg |
220 |
Q |
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| T |
44052289 |
tcaagttaattttaatatttcttttttcgtaactaattttttagaaatttatcctatttttcttctaatgtcata----ttatattgtgattttaggttg |
44052384 |
T |
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| Q |
221 |
tgtccttgtatcataaatttaaagactgtgagaagactcttgaagaaacccaaggtttcatcaaggactgtcatttgttaatcttttttccacagattga |
320 |
Q |
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| T |
44052385 |
tgtccttgtatcagaaatttaaagactgtgagaagactcttgaagaaacccaaggtttcatcaaggactgtcatttgttaatcttttttccacagattga |
44052484 |
T |
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| Q |
321 |
gttcaaggatgattcatagtactgtaactgtttgtttatttatatattttg |
371 |
Q |
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| T |
44052485 |
gttcaaggatgattcatagtactgtaactgtttgtttatttatatattttg |
44052535 |
T |
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