View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12065_low_12 (Length: 366)
Name: NF12065_low_12
Description: NF12065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12065_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 32943065 - 32942719
Alignment:
| Q |
1 |
aacagaaagatcacctaggtttcaagcagagtgtttggccattgctttaaggaaacttggtgttgaaaaatgtattgttgttggttttagctacggtgga |
100 |
Q |
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| T |
32943065 |
aacagaaagatcacctaggtttcaagcagagtgtttggccattgctttaaggaaacttggtgttgaaaaatgtattgttgttggttttagctacggtgga |
32942966 |
T |
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| Q |
101 |
atggtggcttttaaaatggctgagatgtatcctgatttggttcaagctttggttatatctggatccattttggctatgactgattctatcagtgtgagtt |
200 |
Q |
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| T |
32942965 |
atggtggcttttaaaatggctgagatgtatcctgatttggttcaagctttggttatatctggatccattttggctatgactgattctatcagtgttagtt |
32942866 |
T |
|
| Q |
201 |
cattgcaagaacttggattttcttcttcttccgagcttttgttacctaattctgttaaaggacttaaagcacttttatctgttgctgcttataaaaaact |
300 |
Q |
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| T |
32942865 |
cattgcaagaacttggattttcttcttcttctgagcttttgttacctaattctgttaaaggacttaaagcacttttatctgttgctgcttataaaaaact |
32942766 |
T |
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| Q |
301 |
ttggttcccggatcgtttacacaaagactttcttgaggtatgtatgt |
347 |
Q |
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| T |
32942765 |
ttggttcccggatcgtttacacaaagactttcttgaggtatgtatgt |
32942719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 7768449 - 7768606
Alignment:
| Q |
20 |
tttcaagcagagtgtttggccattgctttaaggaaacttggtgttgaaaaatgtattgttgttggttttagctacggtggaatggtggcttttaaaatgg |
119 |
Q |
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| T |
7768449 |
tttcaagcagagtgtttggcaaaggggttaaagaaacttggggtggagaaatgtgttttagttggatttagttatggtggaatggtggcgtttaaaatgg |
7768548 |
T |
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| Q |
120 |
ctgagatgtatcctgatttggttcaagctttggttatatctggatccattttggctat |
177 |
Q |
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| T |
7768549 |
ctgagctttatagtgatctggttcaaggtgtggttgtaactggctctgttttggctat |
7768606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 7737624 - 7737724
Alignment:
| Q |
47 |
ttaaggaaacttggtgttgaaaaatgtattgttgttggttttagctacggtggaatggtggcttttaaaatggctgagatgtatcctgatttggttcaag |
146 |
Q |
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|||| |||||| || || || |||||| |||| ||||| || || || |||||||||||||| ||||||||||||||||||||| ||| |||||| ||| |
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| T |
7737624 |
ttaaagaaactcggggtggagaaatgtgttgtggttggattcagttatggtggaatggtggcgtttaaaatggctgagatgtatagtgagttggttgaag |
7737723 |
T |
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| Q |
147 |
c |
147 |
Q |
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| |
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| T |
7737724 |
c |
7737724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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