View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12065_low_13 (Length: 348)
Name: NF12065_low_13
Description: NF12065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12065_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 13713810 - 13713486
Alignment:
| Q |
18 |
ataacatatatacagaatggccacatccatttatttaattcacattaaacaccacacttcttatctatcttaccttacttgtcatcaaaactaccatggt |
117 |
Q |
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| T |
13713810 |
ataacatatatacagaatggccacatccatttatttaattcacattaaacaccacacttcttatctatcttaccttacttgtcatcaaaactaccatggt |
13713711 |
T |
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| Q |
118 |
tgaagctcaatggcacttcaaaaggactaatattaaaaggcctctgaccaatataattaccaggtggatcatagttacaactaataatggtgctacggcc |
217 |
Q |
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| T |
13713710 |
tgaagctcaatggcacttcaaaaggactaatatcaaaaggcctctgaccaatataattaccaggtggatcatagttacaactaataatggtgctacgacc |
13713611 |
T |
|
| Q |
218 |
atcattacactttaccttagcacatccaacccgaaccgaatcgcgccagacaacttgagtataatgtccacactgataaccagcagcacatgaattactg |
317 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13713610 |
atcattacacttaaccttagcacatccaacccgaaccgaatcgcgccagacaacttgagtataatgtccacactgataaccaacagcacatgaattactg |
13713511 |
T |
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| Q |
318 |
ttgtaattatagtatttcttctctc |
342 |
Q |
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|||||||||||||| |||||||||| |
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| T |
13713510 |
ttgtaattatagtacttcttctctc |
13713486 |
T |
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