View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12065_low_2 (Length: 687)

Name: NF12065_low_2
Description: NF12065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12065_low_2
NF12065_low_2
[»] chr3 (1 HSPs)
chr3 (11-669)||(34141875-34142538)


Alignment Details
Target: chr3 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 11 - 669
Target Start/End: Original strand, 34141875 - 34142538
Alignment:
Q  11 cacagaggtcacagtttcatcttcattatactctttcttaataataatctctggcggccctgcaatcaaaaggttaatgtaagcgcatacaattgcatga 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34141875 cacacaggtcacagtttcatcttcattatactctttcttaataataatctctggcggccctgcaatcaaaaggttaatgtaagcgcgtacaattgcatga 34141974  T
Q  111 agccacatgtaataataatgataaacatacctgttgcattcaatttttcattgcaaatgaacaaattgggagtcatttccattggcattttcttcttttc 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  34141975 agccacatgtaataataatgataaacatacctgttgcattcaatttttcattgcaaatgaacaaattgggagtcatttccattggcattttcttctttac 34142074  T
Q  211 acctgaaattataactgagatgattactt--ggtgaatcaagaggctcctctaaccnnnnnnnnta---tgtcgaccaaaaaggcacaccaaggtgactt 305  Q
    |||||||||||||||||||||||||||||  || |||||||||||||||||||||          |   |||||||||||||||| ||||||||||||||    
T  34142075 acctgaaattataactgagatgattacttcgggggaatcaagaggctcctctaacaaaaaaaaaaaacatgtcgaccaaaaaggcgcaccaaggtgactt 34142174  T
Q  306 tgatcatctgagagattggacatttcattgaacctctgtctggtgttctgaaaaccacaaatatcaatatgcaaaacatgttagcaacttagcatttgat 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34142175 tgatcatctgagagattggacatttcattgaacctctgtctggtgttctgaaaaccacaaatatcaatatgcaaaacatgttagcaacttagcatttgat 34142274  T
Q  406 cagatggaaaataacaagcattcaaaaatcattgaactagctctactcatttgcaaccataatcttgctaccaaaaacccagtttgtgaggcaaaatcaa 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34142275 cagatggaaaataacaagcattcaaaaatcattgaactagctctacgcatttgcaaccataatcttgctaccaaaaacccagtttgtgaggcaaaatcaa 34142374  T
Q  506 ttaattgtataaactatataataatgtataaacaagctcaaagagggacggttaatttaatagtcattatgagtgagcacctcacaggagatagtggctg 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34142375 ttaattgtataaactatataataatgtataaacaagctcaaagagggacggttaatttaatagtcattatgagtgagcacctcacaggagatagtggctg 34142474  T
Q  606 cagtttcaaagtgacttttaatatcttgattaatctctcccttgataacatttggctttggcaa 669  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34142475 cagtttcaaagtgacttttaatatcttgattaatctctcccttaataacatttggctttggcaa 34142538  T

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