View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12065_low_3 (Length: 537)
Name: NF12065_low_3
Description: NF12065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12065_low_3 |
 | |
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| [»] scaffold0341 (4 HSPs) |
| | |
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Alignment Details
Target: scaffold0341 (Bit Score: 413; Significance: 0; HSPs: 4)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 74 - 520
Target Start/End: Original strand, 538 - 981
Alignment:
| Q |
74 |
ggtgttggtgatggtgatgatgacgacgatgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
173 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
538 |
ggtgttggtgatggtgatgatgacg---atgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
634 |
T |
|
| Q |
174 |
taagaaatctaccacctatacccattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
273 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
635 |
taagaaatctaccacctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
734 |
T |
|
| Q |
274 |
aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagct |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
735 |
aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagct |
834 |
T |
|
| Q |
374 |
atattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtc |
473 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
835 |
aaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtc |
934 |
T |
|
| Q |
474 |
ccatttcattgataccaaatattgaacggtgtgaggaacgcaacatg |
520 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
935 |
ccatttcattgataccaaatattaaacggtgtgaggaacgcaacatg |
981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 74 - 520
Target Start/End: Original strand, 8191 - 8634
Alignment:
| Q |
74 |
ggtgttggtgatggtgatgatgacgacgatgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
173 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8191 |
ggtgttggtgatggtgatgatgacg---atgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
8287 |
T |
|
| Q |
174 |
taagaaatctaccacctatacccattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
273 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8288 |
taagaaatctaccacctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
8387 |
T |
|
| Q |
274 |
aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagct |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8388 |
aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagct |
8487 |
T |
|
| Q |
374 |
atattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtc |
473 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8488 |
aaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtc |
8587 |
T |
|
| Q |
474 |
ccatttcattgataccaaatattgaacggtgtgaggaacgcaacatg |
520 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
8588 |
ccatttcattgataccaaatattaaacggtgtgaggaacgcaacatg |
8634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 500 - 554
Alignment:
| Q |
9 |
gaggaggagcagagaatgatggcactgatgttggggaaggtgttggtgatggtga |
63 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
500 |
gaggaggagctgagaatgatggcactgatgctggtgaaggtgttggtgatggtga |
554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 8153 - 8207
Alignment:
| Q |
9 |
gaggaggagcagagaatgatggcactgatgttggggaaggtgttggtgatggtga |
63 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
8153 |
gaggaggagctgagaatgatggcactgatgctggtgaaggtgttggtgatggtga |
8207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 74 - 520
Target Start/End: Original strand, 6506513 - 6506956
Alignment:
| Q |
74 |
ggtgttggtgatggtgatgatgacgacgatgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
173 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6506513 |
ggtgttggtgatggtgatgatgacg---atgatgaaggtgaatcttgagtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtc |
6506609 |
T |
|
| Q |
174 |
taagaaatctaccacctatacccattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
273 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6506610 |
taagaaatctaccacctatacctattctattgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatc |
6506709 |
T |
|
| Q |
274 |
aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagct |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6506710 |
aggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagct |
6506809 |
T |
|
| Q |
374 |
atattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtc |
473 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6506810 |
aaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtc |
6506909 |
T |
|
| Q |
474 |
ccatttcattgataccaaatattgaacggtgtgaggaacgcaacatg |
520 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6506910 |
ccatttcattgataccaaatattaaacggtgtgaggaacgcaacatg |
6506956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 107 - 426
Target Start/End: Original strand, 6516855 - 6517168
Alignment:
| Q |
107 |
gaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacccattctattgt |
206 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||||||| |||||||||||||||||||||||||||||||| || |||| ||| ||| || |||| |
|
|
| T |
6516855 |
gaaggtgaatcttgtgttggttgataaaagagtgaatcggtttcatatctcaaataacaactgggtctaacaactctagcact------catcctgttgt |
6516948 |
T |
|
| Q |
207 |
cacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatggtttg |
306 |
Q |
| |
|
|||||| ||| |||||| |||||||||| | ||||||| |||||||| ||||||| | |||||||||||||||||||| | ||| || |||||||||| |
|
|
| T |
6516949 |
tacaacatattgcgatttcattgatagattgaaccaaacaatcatcacaaaatgttttaaacaaatcaggtgtgcattgagctagaccatatatggtttg |
6517048 |
T |
|
| Q |
307 |
attattatttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagc |
406 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||||||||||||||||||||| ||||| ||||||||| ||||| ||||||||| ||||||||||||| || |
|
|
| T |
6517049 |
attattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatccaacaaatttttccgc |
6517148 |
T |
|
| Q |
407 |
cctttatcaaattcatcttc |
426 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
6517149 |
actttatcaaattcatcttc |
6517168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 102 - 426
Target Start/End: Original strand, 6512451 - 6512769
Alignment:
| Q |
102 |
atgatgaaggtgaatcttgtgtttgttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacccattct |
201 |
Q |
| |
|
||||||| |||| |||| |||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| || |||| |||| || || |
|
|
| T |
6512451 |
atgatgagggtggatctggtgtttgttgatagaagagtgaatcggtttcatatctcaaataacaacttggtctaacaattctagcacc------caacct |
6512544 |
T |
|
| Q |
202 |
attgtcacaacaatttgggatttctttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatg |
301 |
Q |
| |
|
|||| |||||| |||||||| ||||||||||||| ||||||| ||||| ||||||| || ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6512545 |
gttgttacaacatcttgggattgctttgatagattttaccaaacaatcatcgcacaatgatttagacaaatcaggtgtgcattgaacaagagcatatata |
6512644 |
T |
|
| Q |
302 |
gtttgattattatttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttt |
401 |
Q |
| |
|
||||||||||||||| |||||| | ||||| |||| |||||||||||||||||||| || || |||| |||| ||||| ||||||||| ||| ||||||| |
|
|
| T |
6512645 |
gtttgattattattttgaccaacctcatcacttccaacagcatatttaaggtcactatcacctgatgaagctctatttcttaaattatccaataaatttt |
6512744 |
T |
|
| Q |
402 |
tcagccctttatcaaattcatcttc |
426 |
Q |
| |
|
|||| ||||||||||||||||||| |
|
|
| T |
6512745 |
tcagtactttatcaaattcatcttc |
6512769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 126 - 385
Target Start/End: Complemental strand, 6522161 - 6521908
Alignment:
| Q |
126 |
gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacccattctattgtcacaacaatttgggatttc |
225 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||| |||||| ||| |||||| ||||||||||| ||||| |
|
|
| T |
6522161 |
gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-acc-----tattgttacaacaatttgaaatttc |
6522068 |
T |
|
| Q |
226 |
tttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatc |
325 |
Q |
| |
|
||||||||||| | ||||||| |||||||| ||||||| |||||||||||||||||||||||||||| || |||||||||| |||||| ||||||||| | |
|
|
| T |
6522067 |
tttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattacttggaccaacc |
6521968 |
T |
|
| Q |
326 |
acatcatttcctacagcatatttaaggtcactttcccccgatgcagctatattttttaaa |
385 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||| ||||||||| ||||| ||||| |
|
|
| T |
6521967 |
tcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaa |
6521908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 6506475 - 6506529
Alignment:
| Q |
9 |
gaggaggagcagagaatgatggcactgatgttggggaaggtgttggtgatggtga |
63 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
6506475 |
gaggaggagctgagaatgatggcactgatgctggtgaaggtgttggtgatggtga |
6506529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 520
Target Start/End: Complemental strand, 6521832 - 6521779
Alignment:
| Q |
467 |
gcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatg |
520 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||||||||| |||| ||||||||||| |
|
|
| T |
6521832 |
gcaggtccaatttcgttgagaccaaatattgaacggtttgagtaacgcaacatg |
6521779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 47759914 - 47759955
Alignment:
| Q |
266 |
gacaaatcaggtgtgcattgaacaagagcaaatatggtttga |
307 |
Q |
| |
|
||||||||||||||||| ||||||||| || ||||||||||| |
|
|
| T |
47759914 |
gacaaatcaggtgtgcactgaacaagaccatatatggtttga |
47759955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 520
Target Start/End: Complemental strand, 47778150 - 47778097
Alignment:
| Q |
467 |
gcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatg |
520 |
Q |
| |
|
|||||||| |||||||||| | |||||||||||||| |||| ||||||||||| |
|
|
| T |
47778150 |
gcaggtccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatg |
47778097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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