View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12065_low_4 (Length: 535)
Name: NF12065_low_4
Description: NF12065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12065_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 157 - 500
Target Start/End: Complemental strand, 5288935 - 5288592
Alignment:
| Q |
157 |
gtcaagatcgatttgaaatgcattgttattgactacattaaccctatctagctaattgagaaagnnnnnnnnntcatattatgtcttccatgtgttggta |
256 |
Q |
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| T |
5288935 |
gtcaagatcgatttgaaatgcattgttattgactacattaaccctatctagctaattgagaaa-aaaaaaaaatcatattatgtcttccatgtgttggta |
5288837 |
T |
|
| Q |
257 |
gtgccatatacatgcatcacacaccnnnnnnn-aacaatagtactttaaagcttatggtttaggtctttgaatctcttttgttttacgtatcggtattcc |
355 |
Q |
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| T |
5288836 |
gtgccatatacatgcatcacacaccttttttttaacaatagtactttaaagcttatggtttaggtctttgaatctcttttgttttaagtatcggtattcc |
5288737 |
T |
|
| Q |
356 |
aagtgacatactattatactgtgctaacctttattgttgaaagaacttcaatttctggagtggggaagatctttgattcatttaaaatttcaataaagat |
455 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5288736 |
aagtgacatactattatactgtgctaacctttattgttgaaagaacttcaatttctggagtgggaaagatctttgattcatttaaaatttcaataaagat |
5288637 |
T |
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| Q |
456 |
ttcagttgccttttctaactgaaaatattccataataccatacac |
500 |
Q |
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| T |
5288636 |
ttcagttgccttttctaacagaaaatattccattataccatacac |
5288592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 5289064 - 5288975
Alignment:
| Q |
29 |
atccttgttaaagtttaactctatagatcgagtacacatacatgccttatcaagacaaataacgtcacatatgcaaaatatccgttttgc |
118 |
Q |
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| T |
5289064 |
atccttgttaaagtttaactctatagatcgagtagacatacatgccttatcaagacaaataacgtcacatatgcaaaatatccgttttgc |
5288975 |
T |
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