View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12065_low_5 (Length: 502)
Name: NF12065_low_5
Description: NF12065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12065_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 16 - 489
Target Start/End: Complemental strand, 6022125 - 6021652
Alignment:
| Q |
16 |
cataaagtaagttccagtccatttttaaggatgacaagataagcaagcaaacaattttacctctgattcttctgacgagagacagaaagcacattgatac |
115 |
Q |
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| T |
6022125 |
cataaagtaagttccagtccatttttaaggatgacaagataagcaagcaaacaattttacctctgattcttctgacgagagacagaaagcacattgatac |
6022026 |
T |
|
| Q |
116 |
tctttggcatggctcacacatttccttaaaaccggttgatccgtcaaactacagtgtttctctttggatgaatcattcaaaggcctgacatcagtacctg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6022025 |
tctttggcatggctcacacatttccttaaaaccggttgatccgtcaaactacagtgtttctctttggatgaatcattcaaaggcctgacatcagtacctg |
6021926 |
T |
|
| Q |
216 |
gattggtacttccagtaggcttaatttcctcaccatttttagtcctagagatgaattcaggggaaagttttgactttttagtactcttcctttctgtaac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6021925 |
gattggtacttccagtaggcttaatttcctcaccatttttagtcctagagatgaattcaggggaaagttttgactttttagtactcttcctttctgtaac |
6021826 |
T |
|
| Q |
316 |
agaaggtgtggattttcttgacaaactgctttttctttttctagtattgacagtgtttctattactatccatttgcagtcttaaactggatgaagcagat |
415 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6021825 |
agaaggcgtggattttcttgacaaactgctttttctttttctagtattgacagtgtttctattactatccatttgcagtcttaaactggatgaagcagat |
6021726 |
T |
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| Q |
416 |
ccagcaagctctttgcattggttttgcactgaagttaaatcctcaggtgggtcatccacaacatccagcctttg |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6021725 |
ccagcaagctctttgcattggttttgcactgaagttaaatcctcaggtgggtcatccacaacatccagcctttg |
6021652 |
T |
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