View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12065_low_7 (Length: 430)

Name: NF12065_low_7
Description: NF12065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12065_low_7
NF12065_low_7
[»] chr7 (28 HSPs)
chr7 (13-411)||(24390980-24391378)
chr7 (265-411)||(24384761-24384907)
chr7 (13-126)||(24385052-24385165)
chr7 (265-317)||(19637581-19637633)
chr7 (265-380)||(24383733-24383848)
chr7 (265-312)||(46769039-46769086)
chr7 (265-315)||(22021051-22021101)
chr7 (258-310)||(19779275-19779327)
chr7 (265-313)||(22036771-22036819)
chr7 (265-312)||(16846801-16846848)
chr7 (265-320)||(22534303-22534358)
chr7 (265-312)||(26217632-26217679)
chr7 (265-312)||(26229882-26229929)
chr7 (265-312)||(26237279-26237326)
chr7 (264-310)||(16839717-16839763)
chr7 (268-310)||(20414576-20414618)
chr7 (268-310)||(20456193-20456235)
chr7 (82-139)||(14076542-14076599)
chr7 (82-139)||(14386570-14386627)
chr7 (268-317)||(19351400-19351449)
chr7 (274-315)||(22028323-22028364)
chr7 (263-296)||(22039899-22039932)
chr7 (265-317)||(18953269-18953321)
chr7 (265-317)||(18983316-18983368)
chr7 (265-317)||(18997962-18998014)
chr7 (258-310)||(19888056-19888108)
chr7 (341-381)||(20456104-20456144)
chr7 (265-317)||(22473477-22473529)
[»] chr6 (6 HSPs)
chr6 (51-217)||(24950264-24950427)
chr6 (286-372)||(24950446-24950532)
chr6 (75-122)||(6921509-6921556)
chr6 (275-324)||(24955888-24955937)
chr6 (265-313)||(33568660-33568708)
chr6 (75-122)||(6943113-6943160)
[»] chr1 (2 HSPs)
chr1 (268-320)||(39379425-39379477)
chr1 (268-335)||(17561110-17561178)
[»] scaffold0128 (3 HSPs)
scaffold0128 (265-316)||(8269-8320)
scaffold0128 (265-317)||(3830-3882)
scaffold0128 (265-317)||(25317-25369)
[»] chr4 (4 HSPs)
chr4 (268-317)||(3565401-3565450)
chr4 (268-316)||(1686649-1686697)
chr4 (268-314)||(3557386-3557432)
chr4 (265-317)||(3561319-3561371)
[»] scaffold0707 (1 HSPs)
scaffold0707 (265-313)||(5054-5102)
[»] chr5 (1 HSPs)
chr5 (265-317)||(42297807-42297859)
[»] scaffold0097 (2 HSPs)
scaffold0097 (75-126)||(16531-16582)
scaffold0097 (265-314)||(16712-16761)
[»] chr2 (4 HSPs)
chr2 (75-126)||(20712692-20712743)
chr2 (265-312)||(20975226-20975273)
chr2 (265-314)||(20712873-20712922)
chr2 (265-317)||(18921088-18921140)
[»] chr3 (1 HSPs)
chr3 (268-312)||(36339792-36339836)


Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 13 - 411
Target Start/End: Complemental strand, 24391378 - 24390980
Alignment:
Q  13 caaaggcaatccatgagcacacaaatggttggctcattcaacaacacttcatgggaatctctagggggcaacaattgtgtgtatgtctctatccccaaat 112  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24391378 caaaggcaatccatgagcacacaaatggttgactcattcaacaacacttcacgggaatctctagggggcaacaattgtgtgtatgtctctatccccaaat 24391279  T
Q  113 caagtgagatgatcgcataatgctcaaacatcctattcttcgaatcatcatatataatatcatttcgaaagaccaaccaattaagagtgccgttcaaata 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24391278 caagtgagatgatcgcataatgctcaaacatcctattcttcgaatcatcatatataatatcatttcgaaagaccaaccaattaagagtgccgttcaaata 24391179  T
Q  213 cacaccaccacgacaactattgtagccaactttaaagggaataaaaacattgggaaaactttgaatatttctccaaatattatcacccaaactaaaaact 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24391178 cacaccaccacgacaactattgtagccaactttaaagggaataaaaacattgggaaaactttgaatatttctccaaatattatcacccaaactaaaaact 24391079  T
Q  313 ctcacatctctactcatttgacaaaactccactaccttatatgtgtccgttgaattatcaaaaccaaacgcaatatttgatctatttgtccttgtaaaa 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24391078 ctcacatctctactcatttgacaaaactccactaccttatatgtgtccgttgaattatcaaaaccaaacgcaatatttgatctatttgtccttgtaaaa 24390980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 265 - 411
Target Start/End: Complemental strand, 24384907 - 24384761
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactctcacatctctactcatttgacaaaactccactaccttatatgtgtccgttg 364  Q
    ||||||||||||||| |||||||||||| ||| ||||||||||||||  |||||||||||||||||| |   |  | |||||||||||| ||||||||||    
T  24384907 ggaaaactttgaatacttctccaaatatcatctcccaaactaaaaaccttcacatctctactcattttattgatatgcactaccttataagtgtccgttg 24384808  T
Q  365 aattatcaaaaccaaacgcaatatttgatctatttgtccttgtaaaa 411  Q
    |||||||||| || |||||||||||||||| ||  |||| |||||||    
T  24384807 aattatcaaatccgaacgcaatatttgatccatacgtccatgtaaaa 24384761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 24385165 - 24385052
Alignment:
Q  13 caaaggcaatccatgagcacacaaatggttggctcattcaacaacacttcatgggaatctctagggggcaacaattgtgtgtatgtctctatccccaaat 112  Q
    |||||||||||||| ||||||||||   |||  |||||||||||||||||||  ||| ||  |||||||||||||||||||||| ||||| |||||||||    
T  24385165 caaaggcaatccataagcacacaaagacttgtttcattcaacaacacttcatcagaaccttgagggggcaacaattgtgtgtatttctctgtccccaaat 24385066  T
Q  113 caagtgagatgatc 126  Q
     |||||||||||||    
T  24385065 taagtgagatgatc 24385052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 19637581 - 19637633
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactctcac 317  Q
    |||||||||||||||||||||||||  |||||||| |||||||||||||||||    
T  19637581 ggaaaactttgaatatttctccaaactttatcaccaaaactaaaaactctcac 19637633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 380
Target Start/End: Complemental strand, 24383848 - 24383733
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactctcacatctctactcatttgacaaaactccactaccttatatgtgtccgttg 364  Q
    ||||||||| ||||| || |||||||||||||||||||||||||||  ||  ||||||| ||| ||  ||| || | ||| |||||||| ||||| |||     
T  24383848 ggaaaacttggaatacttttccaaatattatcacccaaactaaaaatccttgcatctctgctcgttgcacagaagttcacgaccttataggtgtcagtta 24383749  T
Q  365 aattatcaaaaccaaa 380  Q
    || ||||| |||||||    
T  24383748 aagtatcataaccaaa 24383733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 46769086 - 46769039
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaact 312  Q
    ||||||||||||||| ||||||||||||||||||||| ||| ||||||    
T  46769086 ggaaaactttgaatagttctccaaatattatcacccacactcaaaact 46769039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 22021101 - 22021051
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactctc 315  Q
    |||||||||| |||||||||||||| |||||| ||||||||||| ||||||    
T  22021101 ggaaaactttcaatatttctccaaacattatcgcccaaactaaatactctc 22021051  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 19779327 - 19779275
Alignment:
Q  258 aacattgggaaaactttgaatatttctccaaatattatcacccaaactaaaaa 310  Q
    |||| ||||||||||| |||||| ||||||||||||||||| |||||| ||||    
T  19779327 aacaatgggaaaacttggaatatctctccaaatattatcactcaaactgaaaa 19779275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 22036819 - 22036771
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactc 313  Q
    |||||||||| |||||||||||||| |||||| ||||||||||| ||||    
T  22036819 ggaaaactttcaatatttctccaaacattatcgcccaaactaaatactc 22036771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 16846801 - 16846848
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaact 312  Q
    ||||||||||||||||||||||||  |||||| |||| ||||||||||    
T  16846801 ggaaaactttgaatatttctccaagcattatcgcccagactaaaaact 16846848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 320
Target Start/End: Complemental strand, 22534358 - 22534303
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactctcacatc 320  Q
    |||||||||| |||| ||||||||| ||||||||||||  |||| |||||||||||    
T  22534358 ggaaaacttttaatagttctccaaacattatcacccaaggtaaagactctcacatc 22534303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 26217679 - 26217632
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaact 312  Q
    ||||||||||||||||||||||||   ||| |||||||||||||||||    
T  26217679 ggaaaactttgaatatttctccaagagttaccacccaaactaaaaact 26217632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 26229929 - 26229882
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaact 312  Q
    ||||||||||||||||||||||||   ||| |||||||||||||||||    
T  26229929 ggaaaactttgaatatttctccaacagttaccacccaaactaaaaact 26229882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 26237326 - 26237279
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaact 312  Q
    ||||||||||||||||||||||||   ||| |||||||||||||||||    
T  26237326 ggaaaactttgaatatttctccaacagttaacacccaaactaaaaact 26237279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 16839717 - 16839763
Alignment:
Q  264 gggaaaactttgaatatttctccaaatattatcacccaaactaaaaa 310  Q
    ||||||||||||||||||||||||| | ||||| |||| ||||||||    
T  16839717 gggaaaactttgaatatttctccaagtgttatcgcccagactaaaaa 16839763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 310
Target Start/End: Complemental strand, 20414618 - 20414576
Alignment:
Q  268 aaactttgaatatttctccaaatattatcacccaaactaaaaa 310  Q
    ||||||| |||| ||||||||| ||||||||||||||||||||    
T  20414618 aaacttttaatacttctccaaacattatcacccaaactaaaaa 20414576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 310
Target Start/End: Complemental strand, 20456235 - 20456193
Alignment:
Q  268 aaactttgaatatttctccaaatattatcacccaaactaaaaa 310  Q
    |||| ||||||| ||||||||| ||||||||||||||||||||    
T  20456235 aaacattgaatacttctccaaacattatcacccaaactaaaaa 20456193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 14076599 - 14076542
Alignment:
Q  82 aacaattgtgtgtatgtctctatccccaaatcaagtgagatgatcgcataatgctcaa 139  Q
    ||||||||||| ||||||||  ||||||||||||||||||| ||| || | |||||||    
T  14076599 aacaattgtgtatatgtctcagtccccaaatcaagtgagataatcacaaattgctcaa 14076542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 14386627 - 14386570
Alignment:
Q  82 aacaattgtgtgtatgtctctatccccaaatcaagtgagatgatcgcataatgctcaa 139  Q
    ||||||||||| ||||||||  ||||||||||||||||||| ||| || | |||||||    
T  14386627 aacaattgtgtatatgtctcagtccccaaatcaagtgagataatcacaaattgctcaa 14386570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 19351400 - 19351449
Alignment:
Q  268 aaactttgaatatttctccaaatattatcacccaaactaaaaactctcac 317  Q
    |||||| |||||| |||||||| |||||||| ||||||||||||| ||||    
T  19351400 aaacttggaatatctctccaaacattatcactcaaactaaaaactttcac 19351449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Complemental strand, 22028364 - 22028323
Alignment:
Q  274 tgaatatttctccaaatattatcacccaaactaaaaactctc 315  Q
    |||||||| ||||||| |||||| ||||||||||||||||||    
T  22028364 tgaatattcctccaaacattatcgcccaaactaaaaactctc 22028323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 296
Target Start/End: Complemental strand, 22039932 - 22039899
Alignment:
Q  263 tgggaaaactttgaatatttctccaaatattatc 296  Q
    ||||||||||||||||||||||||||| ||||||    
T  22039932 tgggaaaactttgaatatttctccaaacattatc 22039899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 18953269 - 18953321
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactctcac 317  Q
    |||||||||||||||| |||||||| |||||| || ||| | |||||||||||    
T  18953269 ggaaaactttgaatatgtctccaaacattatcgccaaaattgaaaactctcac 18953321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 18983316 - 18983368
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactctcac 317  Q
    |||||||||||||||| |||||||| |||||| || ||| | |||||||||||    
T  18983316 ggaaaactttgaatatgtctccaaacattatcgcctaaattgaaaactctcac 18983368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 18997962 - 18998014
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactctcac 317  Q
    |||||||||||||||| |||||||| |||||| || ||| | |||||||||||    
T  18997962 ggaaaactttgaatatgtctccaaacattatcgcctaaattgaaaactctcac 18998014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 19888056 - 19888108
Alignment:
Q  258 aacattgggaaaactttgaatatttctccaaatattatcacccaaactaaaaa 310  Q
    |||| |||||||| |  |||||| ||||||||||||||||| |||||||||||    
T  19888056 aacaatgggaaaattcggaatatctctccaaatattatcactcaaactaaaaa 19888108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 20456144 - 20456104
Alignment:
Q  341 ccactaccttatatgtgtccgttgaattatcaaaaccaaac 381  Q
    |||| |||||||||||||| |||||||||||||||| ||||    
T  20456144 ccacaaccttatatgtgtcggttgaattatcaaaacaaaac 20456104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 22473477 - 22473529
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactctcac 317  Q
    ||||| |||||||  |||||||||| ||||||||||||||| || ||||||||    
T  22473477 ggaaatctttgaagttttctccaaacattatcacccaaactgaagactctcac 22473529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 51 - 217
Target Start/End: Original strand, 24950264 - 24950427
Alignment:
Q  51 caacaacacttcatgggaatctctagggggcaacaattgtgtgtatgtctctatccccaaatcaagtgagatgatcgcataatgctcaaacatcctattc 150  Q
    ||||||| ||||||  ||| ||| |||||||||||||||| ||||||||||| ||| | |||||||||||||||||||| ||| |||||   |   |||     
T  24950264 caacaacccttcattagaacctcgagggggcaacaattgtctgtatgtctctgtcctcgaatcaagtgagatgatcgcaaaattctcaacagtatgatta 24950363  T
Q  151 ttcgaatcatcatatataatatcatttcgaaagaccaaccaattaagagtgccgttcaaatacacac 217  Q
    ||| |   ||||||| ||||||||||||||| |||||||||||||||||| ||| ||||||||||||    
T  24950364 ttcca---atcatatgtaatatcatttcgaatgaccaaccaattaagagttccgctcaaatacacac 24950427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 372
Target Start/End: Original strand, 24950446 - 24950532
Alignment:
Q  286 caaatattatcacccaaactaaaaactctcacatctctactcatttgacaaaactccactaccttatatgtgtccgttgaattatca 372  Q
    |||||||||||||||||||||||||||||||| |||||| || ||| |||||  | |||||||||||| ||||| ||| || |||||    
T  24950446 caaatattatcacccaaactaaaaactctcacctctctattcgtttcacaaacgttcactaccttataggtgtcagttaaagtatca 24950532  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 6921509 - 6921556
Alignment:
Q  75 agggggcaacaattgtgtgtatgtctctatccccaaatcaagtgagat 122  Q
    |||| ||||||||||||| ||||||||| |||||||||||||||||||    
T  6921509 agggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagat 6921556  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 324
Target Start/End: Original strand, 24955888 - 24955937
Alignment:
Q  275 gaatatttctccaaatattatcacccaaactaaaaactctcacatctcta 324  Q
    |||||| |||||| |||||||| |||||||||||||||||||| ||||||    
T  24955888 gaatatctctccagatattatcccccaaactaaaaactctcacctctcta 24955937  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 33568708 - 33568660
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactc 313  Q
    ||||||||||||||||||||||||  | ||||||||||||| |||||||    
T  33568708 ggaaaactttgaatatttctccaacaactatcacccaaactgaaaactc 33568660  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 6943113 - 6943160
Alignment:
Q  75 agggggcaacaattgtgtgtatgtctctatccccaaatcaagtgagat 122  Q
    |||| ||||||||| ||| ||||||||| |||||||||||||||||||    
T  6943113 agggagcaacaattttgtatatgtctctgtccccaaatcaagtgagat 6943160  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 39379425 - 39379477
Alignment:
Q  268 aaactttgaatatttctccaaatattatcacccaaactaaaaactctcacatc 320  Q
    ||||||| |||||||||||||| ||||||||||||||| ||||||||||||||    
T  39379425 aaactttcaatatttctccaaacattatcacccaaactgaaaactctcacatc 39379477  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 335
Target Start/End: Original strand, 17561110 - 17561178
Alignment:
Q  268 aaactttgaatatttctccaaatattatcacccaaac-taaaaactctcacatctctactcatttgaca 335  Q
    ||||||||||||| ||||||||  ||||||||||||| |||||| ||||||||  |||||| |||||||    
T  17561110 aaactttgaatatctctccaaacgttatcacccaaacttaaaaattctcacattgctactcctttgaca 17561178  T

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Target: scaffold0128 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 8320 - 8269
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactctca 316  Q
    ||||| |||||||||| |||||||| |||||||||||||||||| |||||||    
T  8320 ggaaatctttgaatatatctccaaacattatcacccaaactaaagactctca 8269  T

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Target: scaffold0128; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 3882 - 3830
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactctcac 317  Q
    ||||||||| ||||| ||||||||| |||||   |||||||||||||||||||    
T  3882 ggaaaacttggaatagttctccaaacattattcgccaaactaaaaactctcac 3830  T

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Target: scaffold0128; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 25369 - 25317
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactctcac 317  Q
    ||||| ||| |||||| |||||||| |||||||||||||||||| ||| ||||    
T  25369 ggaaatcttcgaatatgtctccaaacattatcacccaaactaaagactttcac 25317  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 3565450 - 3565401
Alignment:
Q  268 aaactttgaatatttctccaaatattatcacccaaactaaaaactctcac 317  Q
    ||||||| |||||||||||||| ||||||||| ||||| |||||||||||    
T  3565450 aaactttcaatatttctccaaacattatcacctaaactgaaaactctcac 3565401  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 1686649 - 1686697
Alignment:
Q  268 aaactttgaatatttctccaaatattatcacccaaactaaaaactctca 316  Q
    ||||||| |||||||||||||| ||||||||| ||||| ||||||||||    
T  1686649 aaactttcaatatttctccaaacattatcacctaaactgaaaactctca 1686697  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 3557432 - 3557386
Alignment:
Q  268 aaactttgaatatttctccaaatattatcacccaaactaaaaactct 314  Q
    ||||||| |||||||||||||| ||||||||| ||||| ||||||||    
T  3557432 aaactttcaatatttctccaaacattatcacctaaactgaaaactct 3557386  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 3561319 - 3561371
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactctcac 317  Q
    |||||||||| |||||||||||||| ||||||||| ||||  ||| |||||||    
T  3561319 ggaaaactttcaatatttctccaaacattatcaccaaaaccgaaagctctcac 3561371  T

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Target: scaffold0707 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 5102 - 5054
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactc 313  Q
    ||||||||||||||||||||||||  | ||||||||||||| |||||||    
T  5102 ggaaaactttgaatatttctccaacaactatcacccaaactgaaaactc 5054  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 42297859 - 42297807
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactctcac 317  Q
    ||||||||||||||| ||||||||| ||||||  |||||||||| ||||||||    
T  42297859 ggaaaactttgaatagttctccaaacattatcttccaaactaaagactctcac 42297807  T

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Target: scaffold0097 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 16531 - 16582
Alignment:
Q  75 agggggcaacaattgtgtgtatgtctctatccccaaatcaagtgagatgatc 126  Q
    |||| |||||| ||||||||||||||| ||||||||||| || |||||||||    
T  16531 agggagcaacatttgtgtgtatgtctccatccccaaatcgagggagatgatc 16582  T

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Target: scaffold0097; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 16712 - 16761
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactct 314  Q
    ||||||| ||||||||||||||||| |||||| |||||| | ||||||||    
T  16712 ggaaaacattgaatatttctccaaacattatcgcccaaagtgaaaactct 16761  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 20712692 - 20712743
Alignment:
Q  75 agggggcaacaattgtgtgtatgtctctatccccaaatcaagtgagatgatc 126  Q
    |||| |||||| ||||||||||||||| ||||||||||| || |||||||||    
T  20712692 agggagcaacatttgtgtgtatgtctccatccccaaatcgagggagatgatc 20712743  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 20975273 - 20975226
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaact 312  Q
    ||||||||||||||||||||||||||||| || |||||| | ||||||    
T  20975273 ggaaaactttgaatatttctccaaatattttcgcccaaagtgaaaact 20975226  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 20712873 - 20712922
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactct 314  Q
    ||||||| ||||||||||||||||| |||||| |||||| | ||||||||    
T  20712873 ggaaaacattgaatatttctccaaacattatcgcccaaagtgaaaactct 20712922  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 18921088 - 18921140
Alignment:
Q  265 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactctcac 317  Q
    ||||||||||||||||  ||||||| |||||||| |||||| |||||| ||||    
T  18921088 ggaaaactttgaatatccctccaaacattatcactcaaactgaaaactttcac 18921140  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 36339836 - 36339792
Alignment:
Q  268 aaactttgaatatttctccaaatattatcacccaaactaaaaact 312  Q
    ||||||||||||| |||||||  ||||||||| ||||||||||||    
T  36339836 aaactttgaatatatctccaacaattatcaccaaaactaaaaact 36339792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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