View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12065_low_8 (Length: 416)
Name: NF12065_low_8
Description: NF12065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12065_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 20527134 - 20527355
Alignment:
| Q |
17 |
cacatttcactaaaaaagtggcactcacctcgggttagtattaaatacaccctctttgcatttttataagcactcattgacattttccggctttgttttg |
116 |
Q |
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| T |
20527134 |
cacatttcactaaaaaagtgtcactcacctttgattattatcaaatactccctctttgcatttttataagcactcattaaatttttccctctttgttttg |
20527233 |
T |
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| Q |
117 |
tcttgtgattcatgatgcaattgacagaaatttactcaagcaaaggatgattgcaaagcaacaatgcacaatctgatggtaaataggcctgagttaaaat |
216 |
Q |
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| T |
20527234 |
gcttgtgattcatgatgcaattgtcagaaatttactgaagcaaaggatgattggaaagcaacaatgtacaatctgatggtaaataggcctgagttaaaat |
20527333 |
T |
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| Q |
217 |
ggtggctcggttttggtgaata |
238 |
Q |
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| T |
20527334 |
gtttgctcgtttttggtgaata |
20527355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 236 - 402
Target Start/End: Original strand, 20527459 - 20527624
Alignment:
| Q |
236 |
atattgttgatgagtggtcttgatatgtttcgatgaattttttgccttgaggttgtattaaagttgaacnnnnnnnggtttattccatgtgtatcttgtg |
335 |
Q |
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|||||||||| ||| || |||||||||||||||| | |||||||||||||| |||||||| ||||||| ||||||||||||| |||||||||| |
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| T |
20527459 |
atattgttgaggagcgg-cttgatatgtttcgatcatttttttgccttgagagtgtattaaggttgaactctttttggtttattccatgagtatcttgtg |
20527557 |
T |
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| Q |
336 |
cttagaatagagttttcacctcaatgacgcaatgctctctaggaataattttggatttgtgtttcat |
402 |
Q |
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| T |
20527558 |
cttagaatagagttttcaccttagtgacgccttgctgtctaggaatgattttggatttgtgtttcat |
20527624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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