View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12065_low_9 (Length: 412)

Name: NF12065_low_9
Description: NF12065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12065_low_9
NF12065_low_9
[»] chr5 (2 HSPs)
chr5 (11-394)||(15505991-15506375)
chr5 (70-120)||(35554388-35554438)
[»] chr3 (1 HSPs)
chr3 (78-116)||(13702363-13702401)
[»] chr7 (3 HSPs)
chr7 (85-120)||(32692626-32692661)
chr7 (78-115)||(32692749-32692786)
chr7 (83-120)||(37814838-37814875)
[»] chr8 (1 HSPs)
chr8 (204-256)||(18139028-18139080)
[»] chr4 (1 HSPs)
chr4 (204-236)||(37875873-37875905)
[»] chr2 (1 HSPs)
chr2 (204-236)||(23895776-23895808)


Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 394
Target Start/End: Original strand, 15505991 - 15506375
Alignment:
Q  11 cacagacgccatctccctttggtagcaatagtacctcgccctatgtgtgaatgtgcaaagagcaatcatatttgaacatcaaaattttgacaatttatgt 110  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15505991 cacagacgccgtctccctttggtagcaatagtacctcgccctgtgtgtgaatctgcaaagagcaatcatatttgaacatcaaaattttgacaatttatgt 15506090  T
Q  111 gacaacctatgaatgttatgaatttattagtaattgtaattttgtatgcgtcgtagctgaacactgtgactttgttatttgacattctaagatatataaa 210  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15506091 gacaatctatgaatgttatgaatttattagtaattgtaattttgtatgcgtcgtagctgaacactgtgactttgttatttgacattctaagatatataaa 15506190  T
Q  211 tttcctatttactctactatgcttatttattctcgtggttacattggcataagattaaaggatgatatgtggaaaagctttaattagattttaagccatt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15506191 tttcctatttactctactatgcttatttattctcgtggttacattggcataagattaaaggatgatatgtggaaaagctttaattagcttttaagccatt 15506290  T
Q  311 aaggcatattgtgctcaagagtgtccgacatga-tagtgcatgtgaattcggttggaagtttgttatggaaagacatgccacaag 394  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15506291 aaggcatattgtgctcaagagtgtccgacatgacaagtgcatgtgaattcggttggaagtttgttatggaaagacatgccacaag 15506375  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 35554388 - 35554438
Alignment:
Q  70 gagcaatcatatttgaacatcaaaattttgacaatttatgtgacaacctat 120  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||| ||||    
T  35554388 gagcaatgatatttgaacatcaaaatttcgacaatttatgtgacaatctat 35554438  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 13702401 - 13702363
Alignment:
Q  78 atatttgaacatcaaaattttgacaatttatgtgacaac 116  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  13702401 atatttgaacatcaaaattttgacaacttatgtgacaac 13702363  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 120
Target Start/End: Original strand, 32692626 - 32692661
Alignment:
Q  85 aacatcaaaattttgacaatttatgtgacaacctat 120  Q
    |||||||||||||||| |||||||||||||||||||    
T  32692626 aacatcaaaattttgataatttatgtgacaacctat 32692661  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 32692786 - 32692749
Alignment:
Q  78 atatttgaacatcaaaattttgacaatttatgtgacaa 115  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  32692786 atatttgaacattaaaattttgacaatttatatgacaa 32692749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 37814875 - 37814838
Alignment:
Q  83 tgaacatcaaaattttgacaatttatgtgacaacctat 120  Q
    |||||||||||||||||  |||||||||||||||||||    
T  37814875 tgaacatcaaaattttgctaatttatgtgacaacctat 37814838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 18139080 - 18139028
Alignment:
Q  204 atataaatttcctatttactctactatgcttatttattctcgtggttacattg 256  Q
    ||||||||| ||||||||||||||| || |||| ||||| |||||||| ||||    
T  18139080 atataaattgcctatttactctactttgtttatgtattcccgtggttatattg 18139028  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 37875873 - 37875905
Alignment:
Q  204 atataaatttcctatttactctactatgcttat 236  Q
    |||||||||||||||||||||||||||| ||||    
T  37875873 atataaatttcctatttactctactatgtttat 37875905  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 23895808 - 23895776
Alignment:
Q  204 atataaatttcctatttactctactatgcttat 236  Q
    |||||||||||||||||||||||||||| ||||    
T  23895808 atataaatttcctatttactctactatgtttat 23895776  T

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