View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12066_high_2 (Length: 581)
Name: NF12066_high_2
Description: NF12066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12066_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 47457201 - 47457600
Alignment:
| Q |
1 |
atatatatagtaggtcactaaaaggaagagtggattttggtgaatatatgatttctaaaatggttagatcatacgagcctagaattaattcgatactctg |
100 |
Q |
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| T |
47457201 |
atatatatagtaggtcactaaaaggaagagtggattttggtgaatatatgatttctaaaatggttagatcatacgagcctagaattaattcgatactctg |
47457300 |
T |
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| Q |
101 |
attatgactgatgtgatgataaagttgagtggaaaaatgctatttgctatatgtttaagcttctaaatgcctcagtctcttggttcttgaagaagtagtt |
200 |
Q |
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| T |
47457301 |
attatgactgatgtgatgataaagttgagtggaaaaatgctatttgctatatgtttaagcttctaaatgcctcagtctcttggttcttgaagaagtaatt |
47457400 |
T |
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| Q |
201 |
attaatgatagtcttgtcaacatgcgaagctgagcacatagtagtctcttatgttgcttgtcatgcattatgtggcttgacaaagaatctagtttcatat |
300 |
Q |
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| T |
47457401 |
attagtgatagtcttgt------------ctgagcacatagtagtctcttatgttgcttgtcatgcattatgtggcttgacaaagaatctagtttcatat |
47457488 |
T |
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| Q |
301 |
ggtaggagtaaacgcaattagagtcaattctgttttctttgtgaccaagtgaataaaggtagaattggcagtgatgctaagtttagtgtcaataagtgat |
400 |
Q |
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| T |
47457489 |
ggtaggagtaaacgcaattagagtcaattctgttttctttgcgaccaagtgaataaaggtagaattggcagtgatgctaagtttagtgtcaataagtgat |
47457588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 406 - 565
Target Start/End: Original strand, 47457636 - 47457795
Alignment:
| Q |
406 |
ataataatttgcgatttccatggactgtgatttttgccttaataccgatggtgctttgaagcaaacgactagattggcgggttgtggtggattgattcga |
505 |
Q |
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| T |
47457636 |
ataatcatttgcgatttccatggactgtgatttttgccttaataccgatggtgctttgaagcaaacgactagattggcgggttgtggtggattgattcga |
47457735 |
T |
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| Q |
506 |
tatgattgtggaaggtggtgtgaaggtctttgtttagcttgcttccatggtggtggttag |
565 |
Q |
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| T |
47457736 |
gatgattgtggaaggtggtgtgaaggtctttgtttagcttgcttccatggtggtggttag |
47457795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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