View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12066_high_6 (Length: 246)

Name: NF12066_high_6
Description: NF12066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12066_high_6
NF12066_high_6
[»] chr4 (2 HSPs)
chr4 (19-246)||(55908382-55908609)
chr4 (45-180)||(547197-547332)
[»] chr2 (2 HSPs)
chr2 (19-246)||(1037318-1037545)
chr2 (116-191)||(32785526-32785601)
[»] scaffold0295 (1 HSPs)
scaffold0295 (98-223)||(354-479)
[»] scaffold0262 (1 HSPs)
scaffold0262 (19-105)||(276-362)
[»] chr8 (2 HSPs)
chr8 (105-180)||(17636137-17636212)
chr8 (53-246)||(17627747-17627940)
[»] chr3 (1 HSPs)
chr3 (204-246)||(51764282-51764324)
[»] chr1 (11 HSPs)
chr1 (204-246)||(19468341-19468383)
chr1 (207-240)||(29658807-29658840)
chr1 (207-246)||(9581286-9581325)
chr1 (207-246)||(9586854-9586893)
chr1 (53-94)||(19468196-19468237)
chr1 (207-240)||(29691322-29691355)
chr1 (207-240)||(29718834-29718867)
chr1 (53-101)||(29658644-29658692)
chr1 (53-101)||(29691159-29691207)
chr1 (53-101)||(29718671-29718719)
chr1 (204-244)||(30827327-30827367)
[»] chr7 (2 HSPs)
chr7 (45-94)||(10169819-10169868)
chr7 (45-94)||(10177344-10177393)
[»] chr6 (3 HSPs)
chr6 (204-244)||(6594448-6594488)
chr6 (203-246)||(6432376-6432419)
chr6 (208-246)||(7994028-7994066)
[»] chr5 (2 HSPs)
chr5 (68-151)||(32267785-32267868)
chr5 (204-246)||(41889393-41889435)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 55908382 - 55908609
Alignment:
Q  19 atgtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttcacttattgacgtcaaaatggaacacacaagtttgggggaaaagagt 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  55908382 atgtagcatgctcacagactcggccatgtttgcactcgttaggaattgtccttcacttattgaggtcaaaatggaacacacaagtttgggggaaaagagt 55908481  T
Q  119 gtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccatttagcttgcaattttcagttactaaatgaaaacatcatat 218  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55908482 gtagataattctaatttttcgatggattgtgttttaaaccatcaattaaagtcactccatttagcttgcaattttcagttactaaatgaaaacatcatat 55908581  T
Q  219 tgtttgcttccattttccccaatttgca 246  Q
    ||||||||||||||||||||||||||||    
T  55908582 tgtttgcttccattttccccaatttgca 55908609  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 180
Target Start/End: Complemental strand, 547332 - 547197
Alignment:
Q  45 tgtttgccctcgttaggaattgtccttcacttattgacgtcaaaatggaacacacaagtttgggggaaaagagtgtagataattctaattcttcgatgga 144  Q
    ||||||| |||||||| |||||| ||||||||| |||  |||||||||||| |||||   | |||    |||||||||| |||||||||||||  | |||    
T  547332 tgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaattctaattctttcaagga 547233  T
Q  145 ttgtgttttaaaccatcaattaaagtcactccattt 180  Q
    || |||| ||| || |||||| ||||| ||||||||    
T  547232 ttttgttgtaagccctcaattgaagtctctccattt 547197  T

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Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 1037318 - 1037545
Alignment:
Q  19 atgtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttcacttattgacgtcaaaatggaacacacaagtttgggggaaaagagt 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1037318 atgtagcatgctcacagactcggccatgtttgcactcgttaggaattgtccttcacttattgaggtcaaaatggaacacacaagtttgggggaaaagagt 1037417  T
Q  119 gtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccatttagcttgcaattttcagttactaaatgaaaacatcatat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1037418 gtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccatttaacttgcaattttcagttactaaatgaaaacatcatat 1037517  T
Q  219 tgtttgcttccattttccccaatttgca 246  Q
    ||||||||||||||||||||||||||||    
T  1037518 tgtttgcttccattttccccaatttgca 1037545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 32785526 - 32785601
Alignment:
Q  116 agtgtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccatttagcttgcaatt 191  Q
    |||||| | ||||||||||||| |||||||| |||| ||| || |||||||||||  |||||||| ||| ||||||    
T  32785526 agtgtacaaaattctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggctcgcaatt 32785601  T

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Target: scaffold0295 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 98 - 223
Target Start/End: Original strand, 354 - 479
Alignment:
Q  98 acaagtttgggggaaaagagtgtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccatttagcttgcaattttcagt 197  Q
    ||||||||||||| |||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  354 acaagtttggggggaaagtgcgtagataattctaattcttcaatggattgtgttttaaaccatcaattaaagtcacttcatttagcttgcaattttcagt 453  T
Q  198 tactaaatgaaaacatcatattgttt 223  Q
    ||||||||||||||||||||||||||    
T  454 tactaaatgaaaacatcatattgttt 479  T

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Target: scaffold0262 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 362 - 276
Alignment:
Q  19 atgtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttcacttattgacgtcaaaatggaacacacaagttt 105  Q
    |||||||||||||||| ||||  |||||||||| ||||||||||||| |||||||||||||||  ||||||||||||||||||||||    
T  362 atgtagcatgctcacatactcaaccatgtttgcactcgttaggaattatccttcacttattgagatcaaaatggaacacacaagttt 276  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 17636137 - 17636212
Alignment:
Q  105 tgggggaaaagagtgtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccattt 180  Q
    |||||||||| | |||||| |||||||||||||||||| ||| |||| |||||| |||||| ||||| ||||||||    
T  17636137 tgggggaaaataatgtagagaattctaattcttcgatgaattttgttgtaaaccctcaatttaagtctctccattt 17636212  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 246
Target Start/End: Original strand, 17627747 - 17627940
Alignment:
Q  53 ctcgttaggaattgtccttcacttattgacgtcaaaatggaacacacaagtttgggggaaaagagtgtagataattctaattcttcgatggattgtgttt 152  Q
    |||||||| || ||||||||||||| |||  | |||||||||  ||||  | | |||||| ||||| || | ||||||||||||| | ||||||  |||     
T  17627747 ctcgttagtaaatgtccttcacttaatgagataaaaatggaatgcacatctattggggaagagagtctaaagaattctaattctttggtggatttcgttg 17627846  T
Q  153 taaaccatcaattaaagtcactccatttagcttgcaattttcagttactaaatgaaaacatcatattgtttgcttccattttccccaatttgca 246  Q
    ||| || ||||||||| || ||| |||| |||| |||||    | ||    |||||||||||| | ||||||||||||||||||||||||||||    
T  17627847 taagccctcaattaaaatctctctatttggctttcaattcattgctatgcgatgaaaacatcaaaatgtttgcttccattttccccaatttgca 17627940  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 51764282 - 51764324
Alignment:
Q  204 atgaaaacatcatattgtttgcttccattttccccaatttgca 246  Q
    |||||| ||||||| ||||||||||||||||||||||||||||    
T  51764282 atgaaagcatcataatgtttgcttccattttccccaatttgca 51764324  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 19468341 - 19468383
Alignment:
Q  204 atgaaaacatcatattgtttgcttccattttccccaatttgca 246  Q
    |||||||||||||| |||||||||||||||| |||||||||||    
T  19468341 atgaaaacatcataatgtttgcttccatttttcccaatttgca 19468383  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 29658807 - 29658840
Alignment:
Q  207 aaaacatcatattgtttgcttccattttccccaa 240  Q
    ||||||||||||||||||||||||||||||||||    
T  29658807 aaaacatcatattgtttgcttccattttccccaa 29658840  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 246
Target Start/End: Complemental strand, 9581325 - 9581286
Alignment:
Q  207 aaaacatcatattgtttgcttccattttccccaatttgca 246  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  9581325 aaaacatcataatgtttgcttcaattttccccaatttgca 9581286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 246
Target Start/End: Complemental strand, 9586893 - 9586854
Alignment:
Q  207 aaaacatcatattgtttgcttccattttccccaatttgca 246  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  9586893 aaaacatcataatgtttgcttcaattttccccaatttgca 9586854  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 19468196 - 19468237
Alignment:
Q  53 ctcgttaggaattgtccttcacttattgacgtcaaaatggaa 94  Q
    ||||||||||||||||||||||||| |||  |||||||||||    
T  19468196 ctcgttaggaattgtccttcacttagtgagatcaaaatggaa 19468237  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 29691322 - 29691355
Alignment:
Q  207 aaaacatcatattgtttgcttccattttccccaa 240  Q
    ||||||| ||||||||||||||||||||||||||    
T  29691322 aaaacattatattgtttgcttccattttccccaa 29691355  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 29718834 - 29718867
Alignment:
Q  207 aaaacatcatattgtttgcttccattttccccaa 240  Q
    ||||||| ||||||||||||||||||||||||||    
T  29718834 aaaacattatattgtttgcttccattttccccaa 29718867  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 29658644 - 29658692
Alignment:
Q  53 ctcgttaggaattgtccttcacttattgacgtcaaaatggaacacacaa 101  Q
    |||||||  |||||||||||||||| |||| ||||||||||| ||||||    
T  29658644 ctcgttataaattgtccttcacttagtgacatcaaaatggaatacacaa 29658692  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 29691159 - 29691207
Alignment:
Q  53 ctcgttaggaattgtccttcacttattgacgtcaaaatggaacacacaa 101  Q
    |||||||  |||||||||||||||| |||| ||||||||||| ||||||    
T  29691159 ctcgttataaattgtccttcacttagtgacatcaaaatggaatacacaa 29691207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 29718671 - 29718719
Alignment:
Q  53 ctcgttaggaattgtccttcacttattgacgtcaaaatggaacacacaa 101  Q
    |||||||  |||||||||||||||| |||| ||||||||||| ||||||    
T  29718671 ctcgttataaattgtccttcacttagtgacatcaaaatggaatacacaa 29718719  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 30827367 - 30827327
Alignment:
Q  204 atgaaaacatcatattgtttgcttccattttccccaatttg 244  Q
    ||||||||||| |||||||| |||| |||||||||||||||    
T  30827367 atgaaaacatcctattgtttacttctattttccccaatttg 30827327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 10169819 - 10169868
Alignment:
Q  45 tgtttgccctcgttaggaattgtccttcacttattgacgtcaaaatggaa 94  Q
    ||||||| ||||||||||||||||||||||||| |||  |||||||||||    
T  10169819 tgtttgcactcgttaggaattgtccttcacttagtgagatcaaaatggaa 10169868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 10177344 - 10177393
Alignment:
Q  45 tgtttgccctcgttaggaattgtccttcacttattgacgtcaaaatggaa 94  Q
    ||||||| ||||||||||||||||||||||||| |||  |||||||||||    
T  10177344 tgtttgcactcgttaggaattgtccttcacttagtgagatcaaaatggaa 10177393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 6594448 - 6594488
Alignment:
Q  204 atgaaaacatcatattgtttgcttccattttccccaatttg 244  Q
    ||||||||||||||||||||||||| |||||||||| ||||    
T  6594448 atgaaaacatcatattgtttgcttctattttccccactttg 6594488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 6432419 - 6432376
Alignment:
Q  203 aatgaaaacatcatattgtttgcttccattttccccaatttgca 246  Q
    |||||||  |||||| ||||||||||||||||||||||||||||    
T  6432419 aatgaaaggatcataatgtttgcttccattttccccaatttgca 6432376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 246
Target Start/End: Original strand, 7994028 - 7994066
Alignment:
Q  208 aaacatcatattgtttgcttccattttccccaatttgca 246  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  7994028 aaacatcatattgtttgctaccattttcccaaatttgca 7994066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 151
Target Start/End: Complemental strand, 32267868 - 32267785
Alignment:
Q  68 ccttcacttattgacgtcaaaatggaacacacaagtttgggggaaaagagtgtagataattctaattcttcgatggattgtgtt 151  Q
    |||||||||| |||  ||||||||||||||||| || | ||| |||||||| |||| | |||||| |||| |||||||| ||||    
T  32267868 ccttcacttagtgagatcaaaatggaacacacatgtattgggaaaaagagtctagagagttctaaatctttgatggattttgtt 32267785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 41889393 - 41889435
Alignment:
Q  204 atgaaaacatcatattgtttgcttccattttccccaatttgca 246  Q
    ||||| |||||||| ||||||||||||||||||| ||||||||    
T  41889393 atgaagacatcataatgtttgcttccattttccctaatttgca 41889435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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