View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12066_low_4 (Length: 401)
Name: NF12066_low_4
Description: NF12066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12066_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 188 - 307
Target Start/End: Original strand, 3171222 - 3171340
Alignment:
| Q |
188 |
ccttctttttaactacaactaaccatttaatgaggaccttaaaaggccaaaatacagctagtttccttttactttcatttcattgataggaatggacata |
287 |
Q |
| |
|
|||||||||||||||||||| |||||| | |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3171222 |
ccttctttttaactacaactcaccattaattgag-accttaaaaggccaaaatacaactagtttccttttactttcatttcattgataggaatggacata |
3171320 |
T |
|
| Q |
288 |
actaaaccttctattgaaat |
307 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
3171321 |
actaaaccttttattgaaat |
3171340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University