View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12066_low_5 (Length: 303)

Name: NF12066_low_5
Description: NF12066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12066_low_5
NF12066_low_5
[»] chr1 (7 HSPs)
chr1 (147-303)||(47189293-47189449)
chr1 (122-236)||(51285246-51285361)
chr1 (140-236)||(48494876-48494972)
chr1 (122-222)||(47508236-47508337)
chr1 (147-184)||(19659744-19659781)
chr1 (140-184)||(5733180-5733224)
chr1 (140-184)||(12307934-12307978)
[»] chr7 (1 HSPs)
chr7 (163-236)||(32635363-32635436)
[»] chr8 (3 HSPs)
chr8 (121-222)||(39312533-39312635)
chr8 (145-184)||(30253437-30253476)
chr8 (122-165)||(21468245-21468289)
[»] chr6 (2 HSPs)
chr6 (139-221)||(11139352-11139434)
chr6 (140-222)||(92327-92409)
[»] chr2 (3 HSPs)
chr2 (59-121)||(40210356-40210417)
chr2 (140-184)||(4009273-4009317)
chr2 (122-222)||(43326101-43326202)
[»] scaffold1342 (1 HSPs)
scaffold1342 (140-184)||(1246-1290)
[»] chr5 (2 HSPs)
chr5 (139-225)||(13627360-13627446)
chr5 (122-192)||(3805676-3805747)
[»] scaffold0026 (1 HSPs)
scaffold0026 (122-197)||(91558-91634)


Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 147 - 303
Target Start/End: Original strand, 47189293 - 47189449
Alignment:
Q  147 ggatggccatggcctacccattatttttgggaaattaccaaaatatccttgagttaatatgaaatttacaaccatgacaccatcacttttttctgaaaca 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  47189293 ggatggccatggcctacccattatttttgggaaattaccaaaatacccttgagttaatatgaaatatacaaccatgacactatcacttttttctgaaaca 47189392  T
Q  247 acgctcttctctcttatgtctggccttgcgcgagttcaactttcttctctctcgacc 303  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  47189393 acgctcttctctcttctgtctggccttgcgcgagttcaactttcttctctctagacc 47189449  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 236
Target Start/End: Original strand, 51285246 - 51285361
Alignment:
Q  122 cagtggcggagacacgtagg-acaggggatggccatggcctacccattatttttgggaaattaccaaaatatccttgagttaatatgaaatttacaacca 220  Q
    ||||||||||| ||||| || |||||||| ||||||||||  ||||||||||||| ||||||||||||||| |||| ||||||||| |||| ||||||||    
T  51285246 cagtggcggagccacgtggggacaggggaaggccatggccaccccattatttttgagaaattaccaaaatacccttaagttaatataaaatctacaacca 51285345  T
Q  221 tgacaccatcactttt 236  Q
    || |||| ||||||||    
T  51285346 tgccaccctcactttt 51285361  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 48494972 - 48494876
Alignment:
Q  140 ggacaggggatggccatggcctacccattatttttgggaaattaccaaaatatccttgagttaatatgaaatttacaaccatgacaccatcactttt 236  Q
    ||||||||||||||||||  |  |||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||| |||| ||| ||||    
T  48494972 ggacaggggatggccatgatcgtcccattatttgtggaaaattaccaaaatacccttgagttaatatgaaatttacaaccatgccaccttcagtttt 48494876  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 47508236 - 47508337
Alignment:
Q  122 cagtggcggagacacgt-aggacaggggatggccatggcctacccattatttttgggaaattaccaaaatatccttgagttaatatgaaatttacaacca 220  Q
    ||||||||||| ||||| ||||||||||||||||||||||  ||||| | |||  |||||||||||||||| ||||| ||||| ||||| ||||||||||    
T  47508236 cagtggcggagccacgtgaggacaggggatggccatggccaccccatcaatttgtggaaattaccaaaatacccttgggttaaaatgaattttacaacca 47508335  T
Q  221 tg 222  Q
    ||    
T  47508336 tg 47508337  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 19659781 - 19659744
Alignment:
Q  147 ggatggccatggcctacccattatttttgggaaattac 184  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  19659781 ggatggccatggcctccccattatttttgggaaattac 19659744  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 5733180 - 5733224
Alignment:
Q  140 ggacaggggatggccatggcctacccattatttttgggaaattac 184  Q
    |||| |||||||||||| ||||||||||||||| || ||||||||    
T  5733180 ggactggggatggccatagcctacccattatttatgagaaattac 5733224  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 12307978 - 12307934
Alignment:
Q  140 ggacaggggatggccatggcctacccattatttttgggaaattac 184  Q
    |||||||| ||||||||||||||||||||| || || ||||||||    
T  12307978 ggacagggtatggccatggcctacccattagttctgtgaaattac 12307934  T

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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 32635363 - 32635436
Alignment:
Q  163 cccattatttttgggaaattaccaaaatatccttgagttaatatgaaatttacaaccatgacaccatcactttt 236  Q
    |||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||    
T  32635363 cccattatttatgagaaattaccaaaatacccttgagttaatatgaaatttacaaccatgccaccctcactttt 32635436  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 121 - 222
Target Start/End: Original strand, 39312533 - 39312635
Alignment:
Q  121 gcagtggcggagacacgt-aggacaggggatggccatggcctacccattatttttgggaaattaccaaaatatccttgagttaatatgaaatttacaacc 219  Q
    |||||||||||| ||||| |||||| |||||||||||||||  ||||||| |||  |||||||||||||||| ||||| ||||| ||||| |||||||||    
T  39312533 gcagtggcggagccacgtgaggacatgggatggccatggccaccccattaatttgtggaaattaccaaaatacccttgggttaaaatgaattttacaacc 39312632  T
Q  220 atg 222  Q
    |||    
T  39312633 atg 39312635  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 30253476 - 30253437
Alignment:
Q  145 ggggatggccatggcctacccattatttttgggaaattac 184  Q
    ||||||||| |||||||| |||||||||||||||||||||    
T  30253476 ggggatggcaatggcctatccattatttttgggaaattac 30253437  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 21468245 - 21468289
Alignment:
Q  122 cagtggcggagacacgt-aggacaggggatggccatggcctaccc 165  Q
    ||||||||||||||||| |||||| || |||||||||||||||||    
T  21468245 cagtggcggagacacgtgaggacatggtatggccatggcctaccc 21468289  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 11139352 - 11139434
Alignment:
Q  139 aggacaggggatggccatggcctacccattatttttgggaaattaccaaaatatccttgagttaatatgaaatttacaaccat 221  Q
    ||||| ||||||||||||||||| |||||||||||   ||||||| ||||||| ||||  ||||| |||||||||||||||||    
T  11139352 aggactggggatggccatggcctccccattattttatagaaattatcaaaatacccttaggttaaaatgaaatttacaaccat 11139434  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 92327 - 92409
Alignment:
Q  140 ggacaggggatggccatggcctacccattatttttgggaaattaccaaaatatccttgagttaatatgaaatttacaaccatg 222  Q
    |||||||| ||||||||||||||||||||| || || |||||||| | |||| | ||||  |||| | || ||||||||||||    
T  92327 ggacagggtatggccatggcctacccattaattctgtgaaattactataatacctttgatataatcttaattttacaaccatg 92409  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 40210417 - 40210356
Alignment:
Q  59 tattttagattgagaagaaaaagtatgggtcatgcaaactggtgtttccgagcactggttaag 121  Q
    |||||||||||||||||||||| |||||||||||||||| |||| || |||||||||||||||    
T  40210417 tattttagattgagaagaaaaa-tatgggtcatgcaaaccggtgctttcgagcactggttaag 40210356  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 4009273 - 4009317
Alignment:
Q  140 ggacaggggatggccatggcctacccattatttttgggaaattac 184  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||    
T  4009273 ggacaggggatggccatggcctgcccattatttttgtgaaattac 4009317  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 43326101 - 43326202
Alignment:
Q  122 cagtggcggagacacgt-aggacaggggatggccatggcctacccattatttttgggaaattaccaaaatatccttgagttaatatgaaatttacaacca 220  Q
    ||||||||||| ||| | ||||||||| || | |||||||||||||||| || || |||||||| | |||| ||||||  |||| | || ||||||||||    
T  43326101 cagtggcggagccacatgaggacagggtatagtcatggcctacccattaattctgtgaaattactataatacccttgatataattttaattttacaacca 43326200  T
Q  221 tg 222  Q
    ||    
T  43326201 tg 43326202  T

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Target: scaffold1342 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold1342
Description:

Target: scaffold1342; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 1246 - 1290
Alignment:
Q  140 ggacaggggatggccatggcctacccattatttttgggaaattac 184  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||    
T  1246 ggacaggggatggccatggcctgcccattatttttgtgaaattac 1290  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 225
Target Start/End: Complemental strand, 13627446 - 13627360
Alignment:
Q  139 aggacaggggatggccatggcctacccattatttttgggaaattaccaaaatatccttgagttaatatgaaatttacaaccatgaca 225  Q
    ||||||||||||||||||||||  ||||||| |||    ||||||||||||||  ||||  |||| ||||| |||||||||||||||    
T  13627446 aggacaggggatggccatggccaccccattaatttgtaaaaattaccaaaatactcttggattaaaatgaattttacaaccatgaca 13627360  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 3805747 - 3805676
Alignment:
Q  122 cagtggcggagacacgt-aggacaggggatggccatggcctacccattatttttgggaaattaccaaaatat 192  Q
    ||||||| ||| ||||| ||||| ||| ||||||||||||||||||||| || ||||||| ||||| |||||    
T  3805747 cagtggcagagccacgtgaggactgggtatggccatggcctacccattaattctgggaaaataccataatat 3805676  T

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Target: scaffold0026 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 197
Target Start/End: Original strand, 91558 - 91634
Alignment:
Q  122 cagtggcggagacacgt-aggacaggggatggccatggcctacccattatttttgggaaattaccaaaatatccttg 197  Q
    |||||| |||| ||||| ||||||||| |||||||||||||||||| ||||| || ||||||| || |||| |||||    
T  91558 cagtggtggagccacgtgaggacagggtatggccatggcctacccagtatttctgtgaaattatcataatacccttg 91634  T

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