View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12067_high_1 (Length: 940)

Name: NF12067_high_1
Description: NF12067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12067_high_1
NF12067_high_1
[»] chr6 (1 HSPs)
chr6 (1-855)||(18079176-18080033)
[»] chr1 (7 HSPs)
chr1 (1-557)||(51479832-51480389)
chr1 (569-930)||(51479045-51479401)
chr1 (753-925)||(51496022-51496194)
chr1 (258-570)||(30207205-30207522)
chr1 (311-543)||(51496884-51497118)
chr1 (1-101)||(30206953-30207053)
chr1 (358-456)||(51455436-51455535)
[»] chr5 (1 HSPs)
chr5 (345-451)||(27395957-27396064)
[»] scaffold0020 (1 HSPs)
scaffold0020 (345-446)||(137941-138043)


Alignment Details
Target: chr6 (Bit Score: 792; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 792; E-Value: 0
Query Start/End: Original strand, 1 - 855
Target Start/End: Complemental strand, 18080033 - 18079176
Alignment:
Q  1 cctaccaatacacgcgcttatttttagggtaatctgcgacttttacttttagcttagaatgtgagagccgtgcaacgttcatcccaaaagcaaattaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18080033 cctaccaatacacgcgcttatttttagggtaatctgcgacttttacttttagcttagaatgtgagagccgtgcaacgttcatcccaaaagcaaattaaaa 18079934  T
Q  101 attggaaaatatgtgatactaagagatacaaacttaaaagcaagtacattaaaagtgaagaaatgaggaatctcatattcaggacattagaaatagtgtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18079933 attggaaaatatgtgatactaagagatacaaacttaaaagcaagtacattaaaagtgaagaaatgaggaatctcatattcaggacattagaaatagtgtg 18079834  T
Q  201 aagcagaataacaattatgtaagtaatccaaaagaaataagaagnnnnnnnntggagccatgaagcatgggcaaagcaacacacattaataaaaccatag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18079833 aagcagaataacaattatgtaagtaatccaaaagaaataagaagaaaaaaaatggagccatgaagcatgggcaaagcaacacacattaataaaacgatag 18079734  T
Q  301 agaaaaaagcaagaa---atggacagcaagaagtgagacattttgacgaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttc 397  Q
    |||||||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18079733 agaaaaaagcaagaagaaatggacagcaagaagtgagacatttggacgaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttc 18079634  T
Q  398 atccgatcatcttaaatatggaagaagtctttcagcatatacttggagagctcgacctcatggttgatgttggtttttgtcttcattttaattgcctgta 497  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18079633 atccaatcgtcttaaatatggaagaagtctttcagcatatacttggagagctcgacctcatggttgatgttggtttttgtcttcattttaattgcctgta 18079534  T
Q  498 gtgaaccagattatcacatttcaaatatagaatacaacaaatcacatcaatagttaatctaaaaaggggagaaacagaacctcaattacgtaaacacatg 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18079533 gtgaaccagattatcacatttcaaatatagaatacaacaaatcacatcaatagttaatctaaaaaggggagaaacagaacctcaattacgtaaacacatg 18079434  T
Q  598 taataccaaattcaaacatatatacatgcgcgcgcacacaaacacataatcgaaatataatgagcaaagagatcatgtgatgtcacctttggattccgca 697  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18079433 taataccaaattcaaacatatatacatgcgcgcgcacacaaacacataattgaaatataatgagcaaagagatcatgtgatgtcacctttggattccgca 18079334  T
Q  698 tgtttattttttgcttcggctgttcaatgcttttagcttcacttttctatcagtccttaaagaataacctttactatcatcagataaaacatcactttcc 797  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  18079333 tgtttattttttgcttcggctgttcaatgcttttagcttcacttttctatcagtccttaaagaataacctttactatcatcagataaaacatcactctcc 18079234  T
Q  798 gaattcttttcactgatcagttcattctcatcattcttaacttttttaccactttccc 855  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18079233 gaattcttttcactgatcagttcattctcatcattcttaacttttttaccattttccc 18079176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Complemental strand, 51480389 - 51479832
Alignment:
Q  1 cctaccaatacacgcgcttatttttagggtaatctgcgacttttacttttagcttagaatgtgagagccgtgcaacgttcatcccaaaagcaaattaaaa 100  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||| ||    
T  51480389 cctaccagtacacacgcttatttttagggtaatctgcgacttttacttttagcttagaatgtgagagccctgcaatgttcgtcccaaaagcaaattataa 51480290  T
Q  101 attggaaaatatgtgatactaagagatacaaacttaaaagcaagtacattaaaagtgaagaaatgaggaatctcatattcaggacattagaaatagtgtg 200  Q
    |||||||||||| ||| ||||||| ||||||||  |||| ||||||||||||| |||||||||||||||||||||||||||| || ||| ||||||||||    
T  51480289 attggaaaatatatgaaactaagaaatacaaacggaaaaacaagtacattaaatgtgaagaaatgaggaatctcatattcagtacgttaaaaatagtgtg 51480190  T
Q  201 aagcagaataacaattatgtaagtaatccaaaagaaataagaagnnnnnnnntggagccatgaagcatgggcaaagcaacacacattaataaaaccatag 300  Q
    |||||| ||| |||||||||||||||||||||||||| ||||||         |||||||||||||||||||||||||||||||||||||||||  ||||    
T  51480189 aagcaggatatcaattatgtaagtaatccaaaagaaagaagaagaaaaaa---ggagccatgaagcatgggcaaagcaacacacattaataaaaggatag 51480093  T
Q  301 agaaaaaagcaagaa---atggacagcaagaagtgagacattttgacgaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttc 397  Q
    |||||||||||||||   |||||||||||||| |||||| ||| ||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||    
T  51480092 agaaaaaagcaagaagaaatggacagcaagaaatgagacttttggacgaaaaagtaccttgtctctttgcttctatctccttctcgaccatttgttcttc 51479993  T
Q  398 atccgatcatcttaaatatggaagaagt-ctttcagcatatacttggagagctcgacctcatggttgatgttggtttttgtcttcattttaattgcctgt 496  Q
    |||| ||| ||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| ||||||||| ||||||| |||||||| |||||    
T  51479992 atccaatcgtcttaaatatggaagaagttctttcaccatatacttggagagctcgaactcatggttgttgttggtttctgtcttcgttttaatttcctgt 51479893  T
Q  497 agtgaaccagattatcacatttcaaatatagaatacaacaaatcacatcaatagttaatct 557  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||    
T  51479892 agtgaaccagatgatcacatttcaaatgtagaatacaacaaatcacatgaatagttaatct 51479832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 569 - 930
Target Start/End: Complemental strand, 51479401 - 51479045
Alignment:
Q  569 aaacagaacctcaattacgtaaacacatgtaataccaaattcaaacatatatacatgcgcgcgcacacaaacacataatcgaaatataatgagcaaagag 668  Q
    |||||||||| |||||||||||||||||||||  |||||||||||||||||||  |        ||| | ||||| ||| ||||||||||||||||||||    
T  51479401 aaacagaaccgcaattacgtaaacacatgtaacgccaaattcaaacatatatatgtat------acatacacacagaattgaaatataatgagcaaagag 51479308  T
Q  669 atcatgtgatgtcacctttggattccgcatgtttattttttgcttcggctgttcaatgcttttagctt-cacttttctatcagtccttaaagaataacct 767  Q
    |||||||||||||||||| ||||||||  |||| |||||||||||| ||||||||||||||||||||| ||||||| ||   ||||||||||||||||||    
T  51479307 atcatgtgatgtcaccttaggattccgtttgttaattttttgcttcagctgttcaatgcttttagctttcacttttttaaaggtccttaaagaataacct 51479208  T
Q  768 ttactatcatcagataaaacatcactttccgaattcttttcactgatcagttcattctcatcattcttaacttttttaccactttccccctcttgttcat 867  Q
    ||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | || |||||||||||||    
T  51479207 ttattatcatcagataaaacattactttccaaattcttttcactgatcagttcattctcatcaatcttaacttttttaccattatctccctcttgttcat 51479108  T
Q  868 cttcatcactttcttcagaactataacttaccttcctttttctaccacgtttcttcttctctg 930  Q
    |||| ||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  51479107 cttcgtcattttcttcagaactataacttaccttactttttctaccaggtttcttcttctctg 51479045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 753 - 925
Target Start/End: Complemental strand, 51496194 - 51496022
Alignment:
Q  753 cttaaagaataacctttactatcatcagataaaacatcactttccgaattcttttcactgatcagttcattctcatcattcttaacttttttaccacttt 852  Q
    ||||||||||| |||||| ||||||||||||||||| |||| || ||||||||||||||||||||||||||||| ||| ||||||| ||| ||||| |||    
T  51496194 cttaaagaatagcctttattatcatcagataaaacaccactctctgaattcttttcactgatcagttcattctcctcaatcttaacatttctaccatttt 51496095  T
Q  853 ccccctcttgttcatcttcatcactttcttcagaactataacttaccttcctttttctaccacgtttcttctt 925  Q
    |||| |||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  51496094 ccccatcttgttcatcttcgtcattttcttcagaactataacttaccttcttttttctaccaggtttcttctt 51496022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 258 - 570
Target Start/End: Original strand, 30207205 - 30207522
Alignment:
Q  258 ccatgaagcatgggcaaagcaacacacattaataaaaccataga--gaaaaaagcaagaa---atggacagcaagaagtgagacattttgacgaaaaagt 352  Q
    |||||||||||| | || ||||| | |||||||||||  |||||  ||||||||||||||   ||| |  ||||||||||||||  || || |||||| |    
T  30207205 ccatgaagcatgagaaacgcaactcgcattaataaaaggatagatagaaaaaagcaagaagaaatgaattgcaagaagtgagactcttggaggaaaaa-t 30207303  T
Q  353 acattgtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaatatggaagaagt-ctttcagcatatacttggagagctcg 451  Q
    || ||||||||||||| |||| ||||||||| ||||||||||||||||| ||  ||||||||| |||||||||  ||||| ||||||||||||||||||     
T  30207304 accttgtctctttgcttctatctccttctcggccatttgttcttcatccaattgtcttaaatacggaagaagtattttcaacatatacttggagagctca 30207403  T
Q  452 acctcatggttgatgttggtttttgtcttcattttaattgcctgtagtgaaccagattatcacatttcaaatatagaatacaacaaatcacatcaatagt 551  Q
    ||||||||||   ||| ||||| |  |||   |||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||  ||||||    
T  30207404 acctcatggtcattgtaggtttctcgcttatctttaattgcctgtagtaaaccagattatcacatttcaaatgtagaatgcaacaaatcacaagaatagt 30207503  T
Q  552 taatctaaaaaggggagaa 570  Q
    | ||||| || ||||||||    
T  30207504 tgatctataagggggagaa 30207522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 311 - 543
Target Start/End: Complemental strand, 51497118 - 51496884
Alignment:
Q  311 aagaaatggacagcaagaagtgagacattttgacgaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatctt 410  Q
    ||||||||||  ||||||||| |||| ||| || |||||  ||| |||| |||||||| |||| ||||||||  ||||||| ||||||||| | |  |||    
T  51497118 aagaaatggattgcaagaagtaagacttttggaggaaaatataccttgtatctttgcttctatctccttctcagccatttgctcttcatccaaacgactt 51497019  T
Q  411 aaatatggaagaagt-ctttcagcatatacttggagagctcgacctcatggttgatgttggtttttgtcttcattttaattgcctgtagtgaaccagatt 509  Q
    |||||||||| |||| ||||||||||||| |||||| |||| ||||||||| || |||||||||  |||||| |||||||| |||| ||||| | |||||    
T  51497018 aaatatggaaaaagtactttcagcatatatttggagggctcaacctcatggctgttgttggtttccgtcttctttttaatttcctgcagtgaccaagatt 51496919  T
Q  510 at-cacatttcaaatatagaatacaacaaatcaca 543  Q
    || | ||||| |||| |||||||||| ||||||||    
T  51496918 atccccattttaaatgtagaatacaaaaaatcaca 51496884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 30206953 - 30207053
Alignment:
Q  1 cctaccaatacacgcgcttatttttagggtaatctgcgacttttacttttagcttagaatgtgagagccgtgcaacgttcatcccaaaagcaaattaaaa 100  Q
    ||||||| ||||| ||||  |||||||||  ||||||| |||||| |||||||| ||||  |||||||| || || ||||||||||||  ||||||||||    
T  30206953 cctaccagtacacacgctcttttttagggatatctgcggcttttatttttagctcagaacatgagagccctgtaatgttcatcccaaagacaaattaaaa 30207052  T
Q  101 a 101  Q
    |    
T  30207053 a 30207053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 358 - 456
Target Start/End: Complemental strand, 51455535 - 51455436
Alignment:
Q  358 gtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaatatggaagaagt-ctttcagcatatacttggagagctcgacctc 456  Q
    ||||||| ||| || | |||||||| | |||||||||| ||||| | | |||||||| |||||||||| ||||||||| |||||| |||| ||| |||||    
T  51455535 gtctcttggcttctctttccttctcaatcatttgttctgcatccaaccgtcttaaatgtggaagaagtcctttcagcagatacttagagaactcaacctc 51455436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 345 - 451
Target Start/End: Complemental strand, 27396064 - 27395957
Alignment:
Q  345 gaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaatatggaagaag-tctttcagcatatacttgg 443  Q
    |||||| ||| ||||  ||| ||| |||| ||||||||| |||||||||||| |||| ||| | |||||| |||||||||  |||| |||||||||||||    
T  27396064 gaaaaaataccttgtaacttggcttctatctccttctcggccatttgttcttgatccaatcgtattaaatgtggaagaagagctttgagcatatacttgg 27395965  T
Q  444 agagctcg 451  Q
    ||| ||||    
T  27395964 agaactcg 27395957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 345 - 446
Target Start/End: Original strand, 137941 - 138043
Alignment:
Q  345 gaaaaagtacattgtctctttgctgctatatccttctcgaccatttgttcttcatccgatcatcttaaatatggaagaag-tctttcagcatatacttgg 443  Q
    |||||| ||| |||| |||| ||| |||| ||||||||  |||||||||||  |||  ||  |||||||||||||||||| | |||||||||||||||||    
T  137941 gaaaaaataccttgtatcttggcttctatctccttctcagccatttgttctagatctaattctcttaaatatggaagaaggtatttcagcatatacttgg 138040  T
Q  444 aga 446  Q
    |||    
T  138041 aga 138043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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