View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12067_high_12 (Length: 359)

Name: NF12067_high_12
Description: NF12067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12067_high_12
NF12067_high_12
[»] chr1 (12 HSPs)
chr1 (1-357)||(12950268-12950624)
chr1 (140-357)||(12956024-12956241)
chr1 (140-357)||(12885340-12885557)
chr1 (140-357)||(12914498-12914715)
chr1 (143-357)||(12921821-12922035)
chr1 (168-357)||(12942610-12942799)
chr1 (140-357)||(12992244-12992461)
chr1 (183-349)||(12893672-12893838)
chr1 (185-341)||(12997890-12998045)
chr1 (5-51)||(12956306-12956352)
chr1 (5-104)||(12942894-12942992)
chr1 (284-353)||(13001046-13001115)
[»] chr8 (2 HSPs)
chr8 (302-351)||(14069378-14069427)
chr8 (266-351)||(14073726-14073811)


Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 12950624 - 12950268
Alignment:
Q  1 acaacttagattcaaatgaaatacaaatgtttgcaataatagaatacaatgcttataattgcagagataaatatcaagcacttaaaaagggcaaagcaaa 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  12950624 acaacttagattcaaatgaaatacaaatgttagcaataatagaatacaatgcttataattgtagagctaaatatcaagcacttaaaaagggcaaagcaaa 12950525  T
Q  101 taaacatctagttaattagtgccttaaagaagcacatcaaattgaaacagcaaatacaaatttcctttcatcaattaacctaaagagacaagtgtctcca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12950524 taaacatctagttaattagtgccttaaagaagcacatcaaattgaaacatcaaacacaaatttcctttcatcaattaacctaaagagacaagtgtctcca 12950425  T
Q  201 atcttcactttgcactctttcataaattttgtccatcccttactgaatctgcagccatgaatactctcataataattcacttttacaaaccatgattttc 300  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  12950424 atcttcactttgcatgctttcataaattttgtccatcccttactgaatctgcagccatgaatactctcataataattgacttttacaaaccatgactttc 12950325  T
Q  301 tccccatttttaactccacaatattttcatgacatcctcttttcataaactcctttg 357  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12950324 tccccatttttaactccacaatattttcattacatcctcttttcataaactcctttg 12950268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 140 - 357
Target Start/End: Complemental strand, 12956241 - 12956024
Alignment:
Q  140 aattgaaacagcaaatacaaatttcctttcatcaattaacctaaagagacaagtgtctccaatcttcactttgcactctttcataaattttgtccatccc 239  Q
    |||||||||| |||| |||||||| | ||||||||| ||| ||| ||||||||| |||||||||| ||||||||| |||||||| || ||| |||| ||     
T  12956241 aattgaaacatcaaacacaaattttcgttcatcaatcaacttaaggagacaagtatctccaatctccactttgcattctttcatgaactttctccaacct 12956142  T
Q  240 ttactgaatctgcagccatgaatactctcataataattcacttttacaaaccatgattttctccccatttttaactccacaatattttcatgacatcctc 339  Q
    |||||||| || ||||||  ||||||||| ||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  12956141 ttactgaacctacagccacaaatactctcgtaatagttcacttttacgaaccatgactttctccccattttcaactccacaatattttcatgacatcctc 12956042  T
Q  340 ttttcataaactcctttg 357  Q
    ||||||||||||||||||    
T  12956041 ttttcataaactcctttg 12956024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 140 - 357
Target Start/End: Original strand, 12885340 - 12885557
Alignment:
Q  140 aattgaaacagcaaatacaaatttcctttcatcaattaacctaaagagacaagtgtctccaatcttcactttgcactctttcataaattttgtccatccc 239  Q
    |||||||||| |||| |||||||| || ||||| ||||   ||||||||||||| |||||||||| ||||||||| |||| |||||||||| |||||||     
T  12885340 aattgaaacatcaaacacaaattttctctcatcgattagattaaagagacaagtatctccaatctccactttgcattcttccataaattttctccatcct 12885439  T
Q  240 ttactgaatctgcagccatgaatactctcataataattcacttttacaaaccatgattttctccccatttttaactccacaatattttcatgacatcctc 339  Q
    ||| |||| || |||||||||| ||||||||||||||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||||| || ||||     
T  12885440 ttattgaacctccagccatgaacactctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcattacttcctt 12885539  T
Q  340 ttttcataaactcctttg 357  Q
    ||||||||||||||||||    
T  12885540 ttttcataaactcctttg 12885557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 140 - 357
Target Start/End: Original strand, 12914498 - 12914715
Alignment:
Q  140 aattgaaacagcaaatacaaatttcctttcatcaattaacctaaagagacaagtgtctccaatcttcactttgcactctttcataaattttgtccatccc 239  Q
    |||||||||| |||| ||||||||||| |||||||||||| |||| |||||||| |||||||||| ||||||||   |||||||||||| | |||| ||     
T  12914498 aattgaaacatcaaacacaaatttcctctcatcaattaacttaaaaagacaagtatctccaatctccactttgcctgctttcataaattgtctccaacct 12914597  T
Q  240 ttactgaatctgcagccatgaatactctcataataattcacttttacaaaccatgattttctccccatttttaactccacaatattttcatgacatcctc 339  Q
    |||||||| || ||||||  || ||||  |||| |||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||     
T  12914598 ttactgaacctacagccacaaagactccgataaaaattgacttttacaaaccatgactttctccccattttcaactccacaatattttcattacatcctt 12914697  T
Q  340 ttttcataaactcctttg 357  Q
    ||||||||||||||||||    
T  12914698 ttttcataaactcctttg 12914715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 143 - 357
Target Start/End: Original strand, 12921821 - 12922035
Alignment:
Q  143 tgaaacagcaaatacaaatttcctttcatcaattaacctaaagagacaagtgtctccaatcttcactttgcactctttcataaattttgtccatccctta 242  Q
    ||||||| |||| |||||||| || |||||||||||| ||||||||||||| ||||| |||| |||||||||  ||||||| |||||| |||| || |||    
T  12921821 tgaaacatcaaacacaaattttctctcatcaattaacttaaagagacaagtatctccgatctccactttgcatgctttcatgaattttctccaaccttta 12921920  T
Q  243 ctgaatctgcagccatgaatactctcataataattcacttttacaaaccatgattttctccccatttttaactccacaatattttcatgacatcctcttt 342  Q
    || || |||||||   ||| |||||| |||||||| |||||||| |||||||| | || ||||| ||| ||||||| |||||||||||||| |||||  |    
T  12921921 ctaaacctgcagctccgaacactctcgtaataattgacttttacgaaccatgactgtccccccactttcaactccaaaatattttcatgacttcctccgt 12922020  T
Q  343 tcataaactcctttg 357  Q
    |||||||||||||||    
T  12922021 tcataaactcctttg 12922035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 168 - 357
Target Start/End: Complemental strand, 12942799 - 12942610
Alignment:
Q  168 tcatcaattaacctaaagagacaagtgtctccaatcttcactttgcactctttcataaattttgtccatcccttactgaatctgcagccatgaatactct 267  Q
    |||||||| ||| ||||||||||| | |||||||||| |||||||||  |||||||||||| | |||| || |||| ||| || ||||||  |||||| |    
T  12942799 tcatcaatcaacttaaagagacaaatatctccaatctccactttgcatgctttcataaattgtctccaacctttaccgaacctacagccacaaatactat 12942700  T
Q  268 cataataattcacttttacaaaccatgattttctccccatttttaactccacaatattttcatgacatcctcttttcataaactcctttg 357  Q
    ||||||| |||||||||||  ||||||| |||| ||||||||| || ||||| |||||||||| |||||| |||||||||||||||||||    
T  12942699 cataatagttcacttttacgtaccatgactttccccccattttcaattccacgatattttcattacatccccttttcataaactcctttg 12942610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 140 - 357
Target Start/End: Complemental strand, 12992461 - 12992244
Alignment:
Q  140 aattgaaacagcaaatacaaatttcctttcatcaattaacctaaagagacaagtgtctccaatcttcactttgcactctttcataaattttgtccatccc 239  Q
    |||||||||| |||| ||||| || || |||||||| ||| ||||||||  ||| |||||||||| ||||||||| ||||| || |||| | |||| ||     
T  12992461 aattgaaacatcaaacacaaacttgctctcatcaatcaacttaaagagaagagtatctccaatctccactttgcattcttttatgaattgtctccaacct 12992362  T
Q  240 ttactgaatctgcagccatgaatactctcataataattcacttttacaaaccatgattttctccccatttttaactccacaatattttcatgacatcctc 339  Q
      |  ||||||  | ||||||||||| ||||||||||||||||||||| ||||||||  || ||||||||| ||||||| ||  |||||||||| |||||    
T  12992361 ccagagaatctataaccatgaatactatcataataattcacttttacagaccatgatcgtccccccattttcaactccagaaagttttcatgacttcctc 12992262  T
Q  340 ttttcataaactcctttg 357  Q
    ||||||||||||||||||    
T  12992261 ttttcataaactcctttg 12992244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 183 - 349
Target Start/End: Original strand, 12893672 - 12893838
Alignment:
Q  183 aagagacaagtgtctccaatcttcactttgcactctttcataaattttgtccatcccttactgaatctgcagccatgaatactctcataataattcactt 282  Q
    ||||||||||| | ||||| |||||||||||| | || || ||| ||| |||| || |||| |||||| |||||| | |||||   ||||||||||||||    
T  12893672 aagagacaagtatttccaaacttcactttgcaattttccacaaaatttctccaacctttaccgaatctacagccacggatactaggataataattcactt 12893771  T
Q  283 ttacaaaccatgattttctccccatttttaactccacaatattttcatgacatcctcttttcataaa 349  Q
    |||  |||||||||| | |||| ||||| |||||||||| |||||||||||||||||||||||||||    
T  12893772 ttatgaaccatgattgtatccctattttcaactccacaagattttcatgacatcctcttttcataaa 12893838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 185 - 341
Target Start/End: Complemental strand, 12998045 - 12997890
Alignment:
Q  185 gagacaagtgtctccaatcttcactttgcactctttcataaattttgtccatcccttactgaatctgcagccatgaatactctcataataattcactttt 284  Q
    ||||||||| | |||||| | ||||||||  |||| |||||||||| |||| || ||||||||    || ||| |||||||   ||||||| ||||||||    
T  12998045 gagacaagtatttccaatttccactttgctttcttccataaattttatccaacctttactgaacaaacaaccacgaatactaggataataaatcactttt 12997946  T
Q  285 acaaaccatgattttctccccatttttaactccacaatattttcatgacatcctctt 341  Q
    ||||||||||||| || ||||||||| ||||||||||  |||||| |||||||||||    
T  12997945 acaaaccatgattgtc-ccccattttcaactccacaaatttttcacgacatcctctt 12997890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 12956352 - 12956306
Alignment:
Q  5 cttagattcaaatgaaatacaaatgtttgcaataatagaatacaatg 51  Q
    |||| |||| ||||||||||| |||||||||||||||||||||||||    
T  12956352 cttatattcgaatgaaatacagatgtttgcaataatagaatacaatg 12956306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 12942992 - 12942894
Alignment:
Q  5 cttagattcaaatgaaatacaaatgtttgcaataatagaatacaatgcttataattgcagagataaatatcaagcacttaaaaagggcaaagcaaataaa 104  Q
    ||||| ||||||| |||||||||||||| |||||  | |||||| ||||||  |||| |||  |||||||  |||||||  |||||||||||||||||||    
T  12942992 cttaggttcaaatcaaatacaaatgtttacaataccaaaatacattgcttaatattgtagaactaaatattcagcactt-gaaagggcaaagcaaataaa 12942894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 13001046 - 13001115
Alignment:
Q  284 tacaaaccatgattttctccccatttttaactccacaatattttcatgacatcctcttttcataaactcc 353  Q
    ||||||||||||||||| | ||||||| |||||||| | ||| | ||| || ||||||||||| ||||||    
T  13001046 tacaaaccatgattttccctccattttcaactccaccaaattataatggcaacctcttttcatcaactcc 13001115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 302 - 351
Target Start/End: Complemental strand, 14069427 - 14069378
Alignment:
Q  302 ccccatttttaactccacaatattttcatgacatcctcttttcataaact 351  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  14069427 ccccattttgaactccacaatattttcatgacatccccttttcataaact 14069378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 351
Target Start/End: Complemental strand, 14073811 - 14073726
Alignment:
Q  266 ctcataataattcacttttacaaaccatgattttctccccatttttaactccacaatattttcatgacatcctcttttcataaact 351  Q
    ||||||| | || |||||||| |||||||||| || | ||||||| |||| |||||||||||||| | ||||  ||||||||||||    
T  14073811 ctcataaaatttgacttttacgaaccatgattatccctccattttcaactacacaatattttcataagatccctttttcataaact 14073726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University